XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATA
CACTGGGACATCAAGCCTTCACAAGACCAAGGGCCTCTCCTTTCATTGAT
GTCCAACAAGGCCATTCTCTGCTACATATTTGGCTGGAGGTATGAGCCCC
TCCTTGTGTACTCTTTGGTTAGTGGTTTAGTCCCTGGGAACTCTGGAGTT
ACTGGTTGGCTCATACTGTTGTTCCTCCTATGGGGCTGCAAACCCCTTCA
GCTCCTTGGGGCCTTTCTCTTGCTCCTTCATTGAGGACCCTTTGCTCAGT
CCAATGTATGGCTGTGAGAATCCACTTTTGAATTGGCCAGGGACTGGCAT
AGTTTCTCAGGAGACAGCTAAATCAGGCTCTTGTCAGCAAGCACTTGTTG
GCATCCACAATAGTGTCTGGGTTTGGTGACTGTATATGGGCTGTATCACC
AGGTAGGATAGTTACTGGGTGGCCTTTCCTTCAGTTTCTGCTTCAAACTT
TGTCTCTGTATCTGGTCCCATGAGTATGTTGATCCCACTACTAAGAAGGA
CCGAAGTATCTGCACTGTGGTCTTCCTTCTTCTTGAGCTTCATGTGGTCT
GTGAATTATATCTTGGGTATTCCCCAAATACAGTTGGTGCCGCTCATATT
CTCTTGGCTATGTAGCCTTCCATTGGAGTATGGTTGCCTTATCTAGTATG
ATACCCTTAAGAAAAA

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTAGACTGAAGGTCCTCAACTA
CTACAACTCATAGATAAAAGTAAACACAGTAGAAAAGGAATGAAGAAAGG
AAAGAGGAAAAAGAAATTATTTTTGGAAAGTTACATTTTTATCATCGCCT
ATATTTTTACCTACTGCTAGGGGTCTCCATGACTGCATTGCACAATTCCA
GAATTGAGAATGAGAATGCAAAGCTGGTATCCTGGAATTTACTTTGTACA
ACTGGTTGACACAATAACAAATACTTTCAATTATCTGTTGTGCCATTGGG
TAATGGACCAATGATCCTTCTTCCACTTAAGCATGTTCCCAGGTTTTTCT
GCATATGTGGTTAACATACCACAAACACACCTTTGCAATAGAATCACAGT
GTTGGGACTGTATACTTAAAGTTTTTCAATCTATTCTTGTATACTTTCTA
TAACCAGTATTTGCTGATTTTGTCCTATTTTTATATCTGTACAAATTTCT
AAATATGACTTTCGCCAGAAATATGTTTATTTATTAGAAACTTTTGTCAC
CTGATTTCTATGAATAGTCCTATATACACTCAATGTTTCTTTGCGTTTTC
TTTTTAATAGGAAATGAGGTTGTTGCTTATACCATTGCTCTAATACATAC
ATTACCTGATAGCCTCTCTATATTTATCTT

Query= MSMg01no206_h11.g1 MSMg01no206_h11.g1 CHROMAT_FILE:
MSMg01no206_h11.g1 PHD_FILE: MSMg01no206_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:39 2005
         (602 letters)



>mm_chr1_81583117_81584115
          Length = 999

 Score = 1081 bits (559), Expect = 0.0
 Identities = 588/599 (98%), Gaps = 3/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattagactgaaggtcctcaactactacaactcatagataaaagtaaacacagtagaaaa 60
           ||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||
Sbjct: 796 tattagactgaaggtcctca---actacaactcatagataaaagtaaacaaagtagaaaa 740

                                                                       
Query: 61  ggaatgaagaaaggaaagaggaaaaagaaattatttttggaaagttacatttttatcatc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggaatgaagaaaagaaagaggaaaaagaaattatttttggaaagttacatttttatcatc 680

                                                                       
Query: 121 gcctatatttttacctactgctaggggtctccatgactgcattgcacaattccagaattg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcctatatttttaactactgctaggggtctccatgactgcattgcacaattccagaattg 620

                                                                       
Query: 181 agaatgagaatgcaaagctggtatcctggaatttactttgtacaactggttgacacaata 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 agaatgagaatgcaaagctggtatactggaatttactttgtacaactggttgacacaata 560

                                                                       
Query: 241 acaaatactttcaattatctgttgtgccattgggtaatggaccaatgatccttcttccac 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 559 acaaatactttcaattatctgtagtgccattgggtaatggaccaatgatccttcttccac 500

                                                                       
Query: 301 ttaagcatgttcccaggtttttctgcatatgtggttaacataccacaaacacacctttgc 360
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 499 ttaagcatgttcccaggtttttctgcatatgtggttaacataacaaaaacacacctttgc 440

                                                                       
Query: 361 aatagaatcacagtgttgggactgtatacttaaagtttttcaatctattcttgtatactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatagaatcacagtgttgggactgtatacttaaagtttttcaatctattcttgtatactt 380

                                                                       
Query: 421 tctataaccagtatttgctgattttgtcctatttttatatctgtacaaatttctaaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctataaccagtatttgctgattttgtcctatttttatatctgtacaaatttctaaatat 320

                                                                       
Query: 481 gactttcgccagaaatatgtttatttattagaaacttttgtcacctgatttctatgaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gactttcgccagaaatatgtttatttattagaaacttttgtcacctgatttctatgaata 260

                                                                      
Query: 541 gtcctatatacactcaatgtttctttgcgttttctttttaataggaaatgaggttgttg 599
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 259 gtcctatatacactcaatgtttctttgtgttttctttttaataggaaatgaggttgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 999
Length adjustment: 10
Effective length of query: 592
Effective length of database: 989
Effective search space:   585488
Effective search space used:   585488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)