BAC Information

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BAC

Clone NameMSMg01-206I16
Chromosome1 (Build37)
Map Location 171,850,085 - 171,880,401
singlet/doubletdoublet
Overlap gene1700084C01Rik, Hsd17b7
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960
Downstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206I16.T7 (MSMg01no206_i16.b1)MSMg01-206I16.TJ (MSMg01no206_i16.g1)
ACCAG390119AG390120
length731732
length of high quality
(start - end)		669 (45 - 713)569 (75 - 643)
definitionCHROMAT_FILE: MSMg01no206_i16.b1 PHD_FILE: MSMg01no206_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:45 2005CHROMAT_FILE: MSMg01no206_i16.g1 PHD_FILE: MSMg01no206_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,850,085 - 171,850,750)(171,879,833 - 171,880,401)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTAAACTGTTTGCGATTCTATGTGTAAATCAATATCCTTGGA
CTTGTTGCTATAAAGTCCATTTTATTTCTTGGCTTTAATTACCAGTGGCA
CCATCACTGACTAAGATGCTACTGCTAATTCCAGAATAAACACCAGTGAG
GGTCAAGATATTTATTTTTAAGTATCATTTTGTTAACATGAGACCTGTTT
TGACCACATTCCTTATTCATAGACTATCTTCTTGTTCACAGAATTCCTGT
TCACATACTATCTCCTTCGTTCCACTTGCTGTGTGCCTGTTTGAGTGCCA
CTTTTTGGTTTCTTTTGTTTTGTTTTTCCAGATAGGGCTTCTCTGTGTAG
CATTGTAGAACTAGCTCTGTAGACCGGGTTAGGCTGGAACTCACAGAGAT
CCACCTGCCTCTTCCTCCCAAGTGCTGGGATTAAAGGTGTGTAGCCTGTG
GCAGCCACCACAGCCCCCACCACCAGTGCCTGATCTTCTGCACTATCTCA
CCAGCGCAGTGCCATGCTCAAGGTCTATATGTGGCATCAACCCAGCAAGG
ATGGTAGTTGTGTATGAAAGAGGTTTCTTGATTGTAGCAAAGACAGTTCC
TCAGTGGATGTTCAAGAGAGGGATTGGAATCCTTCCTTGGCTCTGGGACT
TGGGCATGAACAGNTAGGGGCTTAGTGGTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGGCCTTGGGGCTCATCTTCTTTCT
GTAGTTGATTCCCTAGGCTGGAATGCTGCTGGAATGCTGCTGGAATGCTG
CTGTGGTACTTGTCAACTGAGGCTTTTGTTCGGTTGGTTTGTTTTGTTCC
AGTTTTGTTTTCTTCAGTCCTCAATAAGGTCTTCGATAGTTATTTAATCT
AAAATTTCATCATATCCCTCGGGTTCTATCATCCTTATTTACTTTGTAAA
AAAAAAAACCAAAATATTTATTTGAGGTCTGAAGAGATGGCTCAGCACTT
AAGAGCCCCGAGTGCATAGCTTCATTGCTTCTGTAGGCTCCTAGCCACAT
TTGAAGCTGCCGCTCTCAGAAACGTATACCAGCGCTAAGTAACTTGTCTT
CCTTGTATTGATAGAGGGTGCTTTAAAAAAAAATTACCTATTTTTCTGTC
AAGCTGTGTATTTATGTCTCTTACTATTTCTTGCTTGATTTTTCACCTTT
GGTAAGAAGAGATATTATTATCTATATAATAAAGAATGAAGCTTTTGCCT
AAAAATCATTTATTTATCTAACACTTGTGCTCATTTCTCATGTTTATTGT
CCTTTACTTTTCCAAAGGATCAGGGCCAAGACCTTCCATGGTTGTTTCTG
GCTATATTTCCAGTGTTTGACCAGTGCTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_i16.b1 MSMg01no206_i16.b1 CHROMAT_FILE:
MSMg01no206_i16.b1 PHD_FILE: MSMg01no206_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:45 2005
         (669 letters)



>mm_chr1_171849882_171850950
          Length = 1069

 Score = 1288 bits (666), Expect = 0.0
 Identities = 666/666 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccttaaactgtttgcgattctatgtgtaaatcaatatccttggacttgttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccttaaactgtttgcgattctatgtgtaaatcaatatccttggacttgttg 263

                                                                       
Query: 64  ctataaagtccattttatttcttggctttaattaccagtggcaccatcactgactaagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctataaagtccattttatttcttggctttaattaccagtggcaccatcactgactaagat 323

                                                                       
Query: 124 gctactgctaattccagaataaacaccagtgagggtcaagatatttatttttaagtatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctactgctaattccagaataaacaccagtgagggtcaagatatttatttttaagtatca 383

                                                                       
Query: 184 ttttgttaacatgagacctgttttgaccacattccttattcatagactatcttcttgttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttgttaacatgagacctgttttgaccacattccttattcatagactatcttcttgttc 443

                                                                       
Query: 244 acagaattcctgttcacatactatctccttcgttccacttgctgtgtgcctgtttgagtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagaattcctgttcacatactatctccttcgttccacttgctgtgtgcctgtttgagtg 503

                                                                       
Query: 304 ccactttttggtttcttttgttttgtttttccagatagggcttctctgtgtagcattgta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccactttttggtttcttttgttttgtttttccagatagggcttctctgtgtagcattgta 563

                                                                       
Query: 364 gaactagctctgtagaccgggttaggctggaactcacagagatccacctgcctcttcctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaactagctctgtagaccgggttaggctggaactcacagagatccacctgcctcttcctc 623

                                                                       
Query: 424 ccaagtgctgggattaaaggtgtgtagcctgtggcagccaccacagcccccaccaccagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccaagtgctgggattaaaggtgtgtagcctgtggcagccaccacagcccccaccaccagt 683

                                                                       
Query: 484 gcctgatcttctgcactatctcaccagcgcagtgccatgctcaaggtctatatgtggcat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcctgatcttctgcactatctcaccagcgcagtgccatgctcaaggtctatatgtggcat 743

                                                                       
Query: 544 caacccagcaaggatggtagttgtgtatgaaagaggtttcttgattgtagcaaagacagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caacccagcaaggatggtagttgtgtatgaaagaggtttcttgattgtagcaaagacagt 803

                                                                       
Query: 604 tcctcagtggatgttcaagagagggattggaatccttccttggctctgggacttgggcat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcctcagtggatgttcaagagagggattggaatccttccttggctctgggacttgggcat 863

                 
Query: 664 gaacag 669
           ||||||
Sbjct: 864 gaacag 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no206_i16.g1 MSMg01no206_i16.g1 CHROMAT_FILE:
MSMg01no206_i16.g1 PHD_FILE: MSMg01no206_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:45 2005
         (569 letters)



>mm_chr1_171879633_171880601
          Length = 969

 Score = 1093 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggccttggggctcatcttctttctgtagttgattccctaggctggaatgctgctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agggccttggggctcatcttctttctgtagttgattccctaggctggaatgctgctggaa 710

                                                                       
Query: 61  tgctgctggaatgctgctgtggtacttgtcaactgaggcttttgttcggttggtttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgctgctggaatgctgctgtggtacttgtcaactgaggcttttgttcggttggtttgttt 650

                                                                       
Query: 121 tgttccagttttgttttcttcagtcctcaataaggtcttcgatagttatttaatctaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgttccagttttgttttcttcagtcctcaataaggtcttcgatagttatttaatctaaaa 590

                                                                       
Query: 181 tttcatcatatccctcgggttctatcatccttatttactttgtaaaaaaaaaaaccaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tttcatcatatccctcgggttctatcatccttatttactttgtaaaaaaaaaaaccaaaa 530

                                                                       
Query: 241 tatttatttgaggtctgaagagatggctcagcacttaagagccccgagtgcatagcttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tatttatttgaggtctgaagagatggctcagcacttaagagccccgagtgcatagcttca 470

                                                                       
Query: 301 ttgcttctgtaggctcctagccacatttgaagctgccgctctcagaaacgtataccagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttgcttctgtaggctcctagccacatttgaagctgccgctctcagaaacgtataccagcg 410

                                                                       
Query: 361 ctaagtaacttgtcttccttgtattgatagagggtgctttaaaaaaaaattacctatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctaagtaacttgtcttccttgtattgatagagggtgctttaaaaaaaaattacctatttt 350

                                                                       
Query: 421 tctgtcaagctgtgtatttatgtctcttactatttcttgcttgatttttcacctttggta 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 349 tctgtcaagctgtgtatttatgtctcttactatttcttgtttgatttttcacctttggta 290

                                                                       
Query: 481 agaagagatattattatctatataataaagaatgaagcttttgcctaaaaatcatttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agaagagatattattatctatataataaagaatgaagcttttgcctaaaaatcatttatt 230

                                        
Query: 541 tatctaacacttgtgctcatttctcatgt 569
           |||||||||||||||||||||||||||||
Sbjct: 229 tatctaacacttgtgctcatttctcatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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