BAC Information

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BAC

Clone NameMSMg01-206O10
Chromosome1 (Build37)
Map Location 128,928,173 - 128,928,417
singlet/doubletsinglet
Overlap genenone
Upstream geneE030049G20Rik
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206O10.T7 (MSMg01no206_o10.b1)MSMg01-206O10.TJ (MSMg01no206_o10.g1)
ACCAG390336AG390337
length717806
length of high quality
(start - end)
648 (70 - 717)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no206_o10.b1 PHD_FILE: MSMg01no206_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:13 2005CHROMAT_FILE: MSMg01no206_o10.g1 PHD_FILE: MSMg01no206_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAAAATACCCTTAGAAATTATAAGTTTATCCAGTAGAGGAACA
AGATGTAAAACTCAGTAGCATTTATAGACACTGATAATGAACTTGCTGAG
AAAGAAACCGTAAAATAACTACATTCACAATAGCTACCAGAAATACCTAG
GAATAAATTCACTCAAGGAAGTGGATGTTCTCTACAATGAAAATTACATG
AGATCATTTGAAAAGATAGCAAAGAAAGAAAAACGTTGGAAGATGTAATA
TTAATCTTGTTAAAATATCCATGTCATCCAAAGTGAGTCACAAATTTAAT
TCTAATCCCCACCAAAATACCAATGGTATTCCTTATAGAAATGGGACAAA
GTCCATATGGAAACAGACAACACCACAAATAGCCAAAGAAATGCTGAGAT
AAAAAGAGAAATGCTAGGTGCAGCATATGACCTGATCTCAAGTCATTATC
CAGTAACAGAGACAGCATAGTGTGGGTATAAAAACCGACAGATCCGAAAA
GTAAATCCATGTGTCCTATGCCACATGATTTTCAACAACCGTGCTCAGAA
TATATCTTTAGTGAAGGCTAATATCTTAGTTCATTTCTTATTGCTACAAT
GGTCTATTTTGATAAAAGCAACTTAAGTGAGCAAAGGTTGTGCTGGCTCA
CAGTTCCAGGTTATAGT
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCATCAGCCAGTCGCCCAGGGC
TCTAGGTAGCTGCTTTTTAATCTCACACTGCAATATAGAACTGCAAGCTG
GTGTGAAACATGAAGAAAAGGGGGGAGGGGGAGGGCAATGATTAAAGCAA
GTGCAGAATAGAAAGGGAGCAAGCAGGAAGCGGCCTGTGAAGTTCCAGCT
GGCTAGCCATGAGAGATCTCAGCTCTATTTGCAGTTGGAGTGGTGGACGT
GTGGGTGGTGGTGGCAGTTGGTTTGTTTCCCTTCTNCTTCCTTCTCTTTC
CCCCNNTTTTTTTTTTTTTCCCCCCCCCCCCCCTTTTTTTTTCTCTGTTT
TATTCTTTCCCGTCTCTCCCCCCCCCCCTGTTAAAAAAAATTTTCTCCCC
CTGCTCTCGTTCTTATTTCTCTCTTCCCCCCCTTCCCCCCCTCTTTTCCT
TTCTTCTTTTTTCTTTTTCTCCCTATTTTTCTCTCTCCCTTTCTCCCCTA
TTTTTTTTCCCCCATTTCCTTCCTTCTCCTCTTCTCTCTCCTCTCCCTCT
TTTTCCCTCCCCCGTACCCCCCCTTCCTTCTTCTTCTCTCACCCCCTCCC
CTTTCCCTTTCCTTTTACTTTTTTCCCCTTTCCCTTTTCTATTATACTTC
TTCTGCTCTAACTTACGCCCCCTAATACCATCACTCCGCTAATAATCATC
GCACCTATCCGTTAACATTTGTTTCTCCAACTTCATCCTTTCTTGTCTCC
CACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_o10.g1 MSMg01no206_o10.g1 CHROMAT_FILE:
MSMg01no206_o10.g1 PHD_FILE: MSMg01no206_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:13 2005
         (245 letters)



>mm_chr1_128927973_128928617
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccatcagccagtcgcccagggctctaggtagctgctttttaatctcacactgcaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccatcagccagtcgcccagggctctaggtagctgctttttaatctcacactgcaatat 260

                                                                       
Query: 61  agaactgcaagctggtgtgaaacatgaagaaaaggggggagggggagggcaatgattaaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactgcaggctggtgtgaaacatgaagaaaaggggggagggggagggcaatgattaaa 320

                                                                       
Query: 121 gcaagtgcagaatagaaagggagcaagcaggaagcggcctgtgaagttccagctggctag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gcaagtgcagaatagaaagggagcaagcaggaagcggcccgtgaagttccagctggctag 380

                                                                       
Query: 181 ccatgagagatctcagctctatttgcagttggagtggtggacgtgtgggtggtggtggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgagagatctcagctctatttgcagttggagtggtggacgtgtgggtggtggtggca 440

                
Query: 241 gttgg 245
           |||||
Sbjct: 441 gttgg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)