BAC Information

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BAC

Clone NameMSMg01-206P05
Chromosome1 (Build37)
Map Location 16,243,465 - 16,243,749
singlet/doubletsinglet
Overlap geneEG665282
Upstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
Downstream geneStau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206P05.T7 (MSMg01no206_p05.b1)MSMg01-206P05.TJ (MSMg01no206_p05.g1)
ACCAG390370AG390371
length716766
length of high quality
(start - end)
324 (36 - 359)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no206_p05.b1 PHD_FILE: MSMg01no206_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:17 2005CHROMAT_FILE: MSMg01no206_p05.g1 PHD_FILE: MSMg01no206_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGTACCAATCCGAATGGCTGTGAAACACCTGAAAAAATGTTCGCATCCTT
AATCATCAGGGACCTGCAGGTCAAAACAACCCTGAGATTCCATCTCACAC
CAGTTAGAATGGCTAAGATCAAGAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGTGGGATTGCAAGCT
TGTACAGCCACTCTGGAGATCAGTCTGGCGGTTTCTCAGAAAATTGGACA
TGGTACTACCAGAGGATCCCATAATACCTCTCCTGGGCATATATCCAGAA
GATTTTCCCACTACCACCAAACAAACATGCTCAGCTATGTTCATAGCAGC
CTTATCCCCCACAGCCAGAAGCTGGATAGATCCCAGATGCCCCTCAACAG
AGGAATGGATACAAAAAATGTACATTTACACAAAGTAGTACTACTAAGCT
ATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATCGTTGGACCTGGA
GGGCATTATCCTGAGTGAGGTAACCCTATCACAAAAGAACTCAAATGATA
TGTACTCACTGGTAAGTGGATATTAGCCCAGAAACTTATAATACCCAAGA
TATAAGTTACAATTTGCAAATCACATGAAACTCATAAAGAACGAAGACTA
TAGTGTAGACACTTTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGACACAAACCCCCTAGAAATGGTC
ATTCTAATGCTCACTCTCCCACCCGGCCACAGGTCACAGCTTACTGCTTG
AACTACTTGGGCCAGCTCTACACTGCACTGTGATCCGTGGCAACCTAGCA
TAGTGATGTAACTGCAGGAGCAGCATTGTGGCATCAGTTTAGGCAACTGA
GCAGCTCTGGGCTCTGCTCACATAGGACTCTCTTAGAGGCATGTATGTGT
TAAGGGAAAGAGGCCCTGGGAGCCAGGAATGCAGGTCAGGGGCCAATGGC
CATTGCATCTATTGTCCTTACCACAGTGACAACTGAGTCTAACATTCTCA
ACCAGATTTACATCGCCCCCATATTAGGGGGAGGGAGAGGGAAAGGCCCC
CTTTTCTTCTTCTCTTTTGTCCCTCATCATTTGTTATGTTACCTCCACTC
GTCTCTTTCTTTAACACTTTCTTCTCACTATTAACCTTTTTGCACTATCC
CTAATCCTTCCCTCCATTCCTCTGTTTTCTTCCCTTTTCCCTTCCTTCTC
CTATTTTTTGATTTTTCTTCCTTCTTTTGCCCACCTTTTCCATCTTCTAC
CCTATTTACCTTCCCCATATATTCCCTCATTATTTCCTTTTTACCTATCT
CTTACCCCATTCTACCTTCATCCTTTTTCTCTTCCCCTTCACATATTCTC
CTACCCTTGTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_p05.g1 MSMg01no206_p05.g1 CHROMAT_FILE:
MSMg01no206_p05.g1 PHD_FILE: MSMg01no206_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:17 2005
         (291 letters)



>mm_chr1_16243262_16243952
          Length = 691

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gacacaaaccccctagaaatggtcattctaatgctcactctcccacccggccacaggtca 63
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 204 gacacaaaccccctagaaatggtcattctaatgctcactctcccacagggccacaggtca 263

                                                                       
Query: 64  cagcttactgcttgaactacttgggccagctctacactgcactgtgatccgtggcaacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagcttactgcttgaactacttgggccagctctacactgcactgtgatccgtggcaacct 323

                                                                       
Query: 124 agcatagtgatgtaactgcaggagcagcattgtggcatcagtttaggcaactgagcagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcatagtgatgtaactgcaggagcagcattgtggcatcagtttaggcaactgagcagct 383

                                                                       
Query: 184 ctgggctctgctcacataggactctcttagaggcatgtatgtgttaagggaaagaggccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgggctctgctcacataggactctcttagaggcatgtatgtgttaagggaaagaggccc 443

                                                        
Query: 244 tgggagccaggaatgcaggtcaggggccaatggccattgcatcta 288
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgggagccaggaatgcaggtcaggggccaatggccattgcatcta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)