BAC Information

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BAC

Clone NameMSMg01-207A09
Chromosome1 (Build37)
Map Location 156,947,673 - 156,948,053
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1e, LOC671336, Ier5
Downstream geneMr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207A09.T7 (MSMg01no207_a09.b1)MSMg01-207A09.TJ (MSMg01no207_a09.g1)
ACCAG390412AG390413
length1,1831,268
length of high quality
(start - end)
287 (115 - 401)382 (70 - 451)
definitionCHROMAT_FILE: MSMg01no207_a09.b1 PHD_FILE: MSMg01no207_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:24 2005CHROMAT_FILE: MSMg01no207_a09.g1 PHD_FILE: MSMg01no207_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACATTGGNCCTATACATCCTATGGGAGAGGATCCGCGGAATTCAGG
CAGGTTTTTGGAACACCTTCTTCAACCCATGAGAGTTGGCCTCCCTTCCC
CTGGCCCTTAATGCCCCTCCAGTTTGAACCCCCTCTGTCTTAGTTAAGGT
TTTACTGCTGTGAACAGACACCATGACCCTCTCAACTCTTATAAGGACAA
CATTTAATTGGGGCTGACTTACAGGTTCAGAGGTTCAATCCATTATTATC
AAGGAAGGAGCATGGCAGTGTCCAGGCAGGCATGGTGCAGAAGGAGCTGA
GAGTTCTACATTTTCATATGAAGGCTGCTAAGAGAAGACTCACTTCTAGG
AAGCTAGAACATGGGTTTTAAAGCCCATGCCCACAGTGACACACTTCCTC
CTTTTAGGCCACACTTCCAAATAGTGCCACTCCCTGAGTCAAGCATATTC
AAATCATTTCACCCTGCTTTTTGGTAATGTCCTGGGCTGATTTTAAAAGG
AGTGAGGGGCAGGGAGAACACTTTAGCAAAATGGCCAGGAACAGCCTGAG
CAATGCAATCGGGAAGGAACAGAAAGGAGGTTGGCAATTTAAGACGTCCG
GAGCAGATCTCTTGCCTTTGAAATTTCTTGTCTAGTGAGGGCCACCAAAT
ACACCTCTTTGTTCTCCAAATTTTCTGGCAAGAAACTAGGTGCTAACTGC
ACAACCTCCCAAGAATAAACGGTCGTCTTTCTGAAATAATGGTCTTAGTC
AATGTCTTTCAACCTGACTATACGTTAGAATTACCTGAGGTGCTTTTCAA
ATTTTCCACTGCTTGGACTCTCCCTCCAGAGACCCAGATTTAATTGGTCT
GGTGCAAATACTCAAGTCAGGCTTTAACAATTATGCTAAAATTATTGAAA
ATATTAATTTGAAAAACGGTCTCAGGGGTAGTTTTTTTGGAAAAAACCCA
CTTCTGAAAAATAAAAAAAGGGGGAAAAAAAATTTTGAAAATGGGTACAT
GACTCTGTTTTATAATACAATTTTTTTTTTTTGTTTTTTGGAAAAAAATT
TTTATTTTATTGTATGTTTAAGGGTGCCCTTTTTCTTCTCTTCATTTTTT
GGGCTGTTATAAATTAAATCTTGTTGGTTGTGTTTTTTTTAATAACATAT
ATTTTTTTTTTCTTATTAAATATATAAATCTTA
NTTTTATGATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGAAGGGAGGGACTCTGGGCTTCAGTTGT
AGCAGTAATAGTGGCCAAAGTTAGCACCCCCCAAACCATCAGATCTGAAG
GCATCCTGGTTGTGAACTGGCTCTTAATCAAGCCTACCTCTCACTAGTAT
TTCTTCCATGTAAATGGCCAAACCTATTGTAGGGTCAGGCAAACCTTTCA
CATAGACACCGTGTAAGCTGTGGTTAACTTTATTATTTAGATTGACTCTG
AGAGTTGCCATTTATCTTCTGTGTAATAAAGAAGGTGTATCTGTGATTTC
TTCATTTTATATTTGAAACTTCAGGGCCATAAGGCAATTTACAGAGCCAT
CTTTTACCAGTACAATCTTGTCATGGTCCTTCTGACAGGGATTTGCAAGA
TTTTTTTTCTGCCCCCCCATTGACTGACCAGAAAAATTTTAAAAAACCTC
CCCCCATACTTGACAAAAAACAATTTACATAATCAACATGGGAAACCAGA
ACTTATTTGTATTTTTAGAACTTACTAGATTTCCCCCAAAATAGATCAGT
TACTTATTGTGTGTGTGTGTGGTGTTTCTCTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTCTTTTTCTTTTCTTT
TTATTCTCTTTTTTTTATTTTATTCATTTTTTTTTAATTTTTTCTATTTT
AATTTATTTTTTTCATATTTTATATTTTTTATTTCTTTTTTTATTACTAT
TTTTCTTTATTAATCNTTTTTTCTTTTATTTTAATCTTTTTTTTTATTTT
TTATACTAATTTTTTTTTATTATTTTTTATTCCTTTTTTTTCTTTTTTTT
ATTTTCTTTTTTTCTTTTTTTATATATATTTTTTTTATTTTTTATTTTTT
TTTTTAATTTTTTATTTATTTTTTTTTTATTTATCCTTCNTTTATCTTTT
CTTTTTTTTTTTTTTATTATTTTTTTTTTTATTACTTTATATCTTTCTTC
ATTTATATTTTTATAAAATATTTATATATATTACTTTTATATATTTTATC
ATATATTATTTATTAATTATATTTATATAATATATATTTCTNATTCTTTT
TTATCTATCTATTATTTTTTTATTTCATACATTAATTTATTTTTATCATT
ATTTATTATCATTATTATACTTTTTATTTTTATAATTTCTTTTCTTTCTA
CATNTTCATTGCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_a09.g1 MSMg01no207_a09.g1 CHROMAT_FILE:
MSMg01no207_a09.g1 PHD_FILE: MSMg01no207_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:25 2005
         (382 letters)



>mm_chr1_156947473_156948254
          Length = 782

 Score =  698 bits (361), Expect = 0.0
 Identities = 376/385 (97%), Gaps = 8/385 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaagggagggactctgggcttcagttgtagcagtaatagtggccaaagttagcaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 581 ctagaagggagggactctgggcttcagttgtagcagtaatagtggccaaagttagcatcc 522

                                                                       
Query: 61  cccaaaccatcagatctgaaggcatcctggttgtgaactggctcttaatcaagcctacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cccaaaccatcagatctgaaggcatcctggttgtgaactggctcttaatcaagcctacct 462

                                                                       
Query: 121 ctcactagtatttcttccatgtaaatggccaaacctattgtagggtcaggcaaacctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctcactagtatttcttccatgtaaatggccaaacctattgtagggtcaggcaaacctttc 402

                                                                       
Query: 181 acatagacaccgtgtaagctgtggttaactttattatttagattgactctgagagttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acatagacaccgtgtaagctgtggttaactttattatttagattgactctgagagttgcc 342

                                                                       
Query: 241 atttatcttctgtgtaataaagaaggtgtatctgtgatttcttcattttatatttgaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atttatcttctgtgtaataaagaaggtgtatctgtgatttcttcattttatatttgaaac 282

                                                                       
Query: 301 ttcagggccataaggcaatttacagagccat----cttttaccagtacaatcttgtcatg 356
           |||||||||||||||||||||||||||||||    |    ||||||||||||||||||||
Sbjct: 281 ttcagggccataaggcaatttacagagccatcaggc----accagtacaatcttgtcatg 226

                                    
Query: 357 gtccttctgacagggatttgcaaga 381
           |||||||||||||||||||||||||
Sbjct: 225 gtccttctgacagggatttgcaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)