BAC Information

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BAC

Clone NameMSMg01-207D10
Chromosome1 (Build37)
Map Location 99,101,186 - 99,101,506
singlet/doubletsinglet
Overlap geneEG634331
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1
Downstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207D10.T7 (MSMg01no207_d10.b1)MSMg01-207D10.TJ (MSMg01no207_d10.g1)
ACCAG390527AG390528
length1,2401,256
length of high quality
(start - end)
422 (29 - 450)322 (130 - 451)
definitionCHROMAT_FILE: MSMg01no207_d10.b1 PHD_FILE: MSMg01no207_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:52 2005CHROMAT_FILE: MSMg01no207_d10.g1 PHD_FILE: MSMg01no207_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACACTGTGCGCTCTAGACTCCATAGGGAGAGGATCCGCGGAATTCT
CACTGAGGAATATTGAAAGGCCAAGAAGCCCCTAAAGTCAACATTCTTAG
TCATCAGGAAAATGCAAATCAAACCACCCCTGAGGTTCCACCTCACACCA
GTCAGAATGGCTAAGATAAAAAATTTAGGTGATAGAAGATGCTAGTGAGG
ATGTGGAGAAAGAAGAATACTCCTTTGCTGGTAGGATTGCAAGCTGGTAC
AACCACTCTGGAAATCACTTTGGTGGTTCCTTAGAAAATTGGACTTAGTG
TTACTGGAGGATCCAGCAATATCACTCCTGGGCATATACCCAGAAGATGT
TCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTAT
TTATAATAGCCAGAAGCAGGAAAGAATCCAGATGTCCCTCAACAGAAGAA
TTTTTTTTACCCCGCCCCACATTGACACAATATGCAGCTATTAAAAAGAA
TAAATTTATGAAAAATTTAGACTAATGGATGGATCAGAGGAAACCATCCT
GAGTGAGGTAACCCAATCAAAAAGAACACAAATGATATGCACACACTTAT
AAGTGGATATTAGCCCAGAAGCTCAGAATACCCTAGATACTATTCTCAAA
ACACTTGAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTCAATCC
TTCCTGAGGGAGGGGGGTGGCAAAATACCCATGGAAGGATTTACAGAGAC
TAAGTTCAGGGACAGAGACTAAAGGAATGATCATCCTCAGACTGTCCCAC
CTGGGGATCCATCCCATATACAACCACCAAACCCAAATACTATTGCGGAT
ACCAACAAGAGATTGCTGACAGTCACATGATAAAGCTGTCCCCTGAGAGG
CTCTGCCAGTGTCTTGATAATACAGAAGTGGAAGCTTCCAGTTATTCTTT
GGTTAGAGTACTGGATTCCCCTTGAAGGTATTTTGAATAAGTTACCCATG
GATCTTAAAAATTTTTGCCGCCCCTTATGTTAAACCCCTATATTTTTTTT
CCTTAATTCCCTCAAATCTCCGTGGTATTATATCTCCTACTTCATAATAA
TCCGGTGTTGACTCTATTTCTTTTTCTTCCTACTAATAAAAAGTAGTGGG
TTCTCTTTCNTTCCTTTCAATGTAATGTCTTTTTTCTTTTATTTGTTTAT
CTCTCTTATATTTTATATCTTCTATTCCTTATTCCATTTT
TTTTTATGAGGGNTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAAGCTCTTGTATGCTGTTTGTTTTTTTA
TTCCCTTTCCTTTAATAATTTACCCCCTATCTGAAAGCTAGATTATAGTA
TGATTGCTATGAACTTGTTTCAATGTAATCTGTTGGATGACATTTTATCT
TATTGTGTCTGATTAGTTATACAATTTTGATTTTAGCTATTTTTATTGAT
TTGGAAAATCTTTTGATATCTTTGACATATTAATGTCTCACATGAATTCT
AACAATATCATTATTTGTTCTTTTTATTCATTCCCAAATATTTTATTATT
TCCCCTCATTTTTTAATTATTTTTCAAGTATGCATTGTCAAATTGCATGT
TTAAAGCTCATTAACTATTCTATGGTATCTAATACACTATTGATGCTTTA
TTTTATCTTCCCGTTATTTATGTCTTTGAGTTTGTAGCCACTTTTAGTAC
AAAAGCTACAAGGAATGCTAGACTCAGCTTTGCCAAGGTTCTGGGTTTAG
GTAATGTAGGTTTTCAGCAATACAATGGATAAAATATTTGAAGACAGAAT
ACAAGATCATATCCAAAACATCATCTACCATGATCAGGTAGGCCTAGCTT
CAGAGATGCAGATATAATCCCACATCATTAATTCAATATATATAGCTAAC
CACATAAACAGACTTAATGACAAAAATCACAGGATCACACATTAGATACA
GGAGAGTACTTTTGAGAAATGCAACATCTCTTTATGATAAATGTCCTAGA
TAATCTTGATATATTAGAAACCATCCTTCAATAAAGCACAGGTGATTCAT
AATTCATCTTATTGTAACACACTCCATTTTGCTTTGAATATTAAATCTAT
GAACAGGGGCTCTTTCCATATTTATTTCTTTTATTAATTGAATTCTAATC
TAGAACAAAAAGAAATTTGACATGAGTCCTTGTGTGTTTTATTTTAAACT
GGAATATTATCATTCTCCTCTTTTATTTTCTGATTTTACTCCTTTTATGA
AATATAAAATCCCTATATATTTTCTTGTAAGAAATAATTCTCATATCATA
CATTTTTTCTTCTTAATAATTATGATTAATATTTATCTTCCCTCTTTTTA
TATATCAATTTTCATTCTTTTTTATTATTCCTAACTATTATTTTTATCTC
CTTTTTCATTATTTGGTTTATATATATCCTTCATAACTAATTCTATCGTT
ATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_d10.g1 MSMg01no207_d10.g1 CHROMAT_FILE:
MSMg01no207_d10.g1 PHD_FILE: MSMg01no207_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:52 2005
         (322 letters)



>mm_chr1_99100986_99101707
          Length = 722

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaaagctagattatagtatgattgctatgaacttgtttcaatgtaatctgttggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tctgaaagctagattatagtatgattgctatgaacttgtttcaatgtaatctgttggatg 462

                                                                       
Query: 61  acattttatcttattgtgtctgattagttatacaattttgattttagctatttttattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acattttatcttattgtgtctgattagttatacaattttgattttagctatttttattga 402

                                                                       
Query: 121 tttggaaaatcttttgatatctttgacatattaatgtctcacatgaattctaacaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttggaaaatcttttgatatctttgacatattaatgtctcacatgaattctaacaatatc 342

                                                                       
Query: 181 attatttgttctttttattcattcccaaatattttattatttcccctcattttttaatta 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 341 attatttgttctttttattcattcccaaatattttattattccccctcatttttaaatta 282

                                                                       
Query: 241 tttttcaagtatgcattgtcaaattgcatgtttaaagctcattaactattctatggtatc 300
           |||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 281 tttttcaagtatgcgttgtcaaattgcatgccaaaagctcattaactattctatggtatc 222

                                
Query: 301 taatacactattgatgcttta 321
           |||||||||||||||||||||
Sbjct: 221 taatacactattgatgcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)