BAC Information

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BAC

Clone NameMSMg01-207H10
Chromosome1 (Build37)
Map Location 162,639,415 - 162,639,797
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207H10.T7 (MSMg01no207_h10.b1)MSMg01-207H10.TJ (MSMg01no207_h10.g1)
ACCAG390685AG390686
length1,2961,304
length of high quality
(start - end)
322 (133 - 454)385 (70 - 454)
definitionCHROMAT_FILE: MSMg01no207_h10.b1 PHD_FILE: MSMg01no207_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:26 2005CHROMAT_FILE: MSMg01no207_h10.g1 PHD_FILE: MSMg01no207_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TCCTGACAAATGGAGATTCTCCAGATACTTAAAAGTTACACTCATATAAG
AATTTAGCAAGGCCTAGGAAATAGGGCCCGCTGTGGTATTGCATTTTTCA
TGAGAAGGCCTGTAAGAGCAGAACCCCCTGGCGCTAGTCTTCACAAGGCT
CAAAGAAATAGCACTAGGGTGTGAGATCCTTACCTGTCACTGAGCTGACC
CTAGGCAGGACTGCTTTATCTTTACTGTAAACATCTACCTGGTTCCTGTA
AGTCCCTTTGTAGTCATTCCTTTGTTTTGTATCAGGTAACTTCAATGTAC
TTTGCCTGCTGTTGACTTCCAACCCCTTTTATTTTCTGTACTATTTAAGA
CTGTTGTTCACTTTGTGAGATTACATTCAGATTCTACACAATCTCTCGTG
TTGTTTTTTTCCGCCCCCACTGATGCCTTGCCCACCTGCAAAAAAAGAGT
TGTTCCACGCAGACAAAGGGACCCAGAGGGTCTGCAGCACTCCAGCAGGA
AAGAGTTTCACCAAAGATAAAGCTTTAGCTTTGCCCTAGGCATGTCATTC
TCAATCAGTTGCCTGCATATTGTGGGATGATCTTTTTCTTGTGTTGTGTT
GTGTTGTGTTGTAGTTTTCTTTTTGTTTTATATTTTTCTATCTTTATTAA
TTATATATTTCTCTTTTTTTCTTATTCATTCTTTAATTAATCTTTTACTA
TTCTTCTCTTCCTATTCTCCTTCTTTCTCTTTCTACTTTCTTTTCCTTTT
CTTACTCTCTTTTTTTATTTTACTTCTATTATTTTACCTTATTATATTTT
TCTTTTCTCTTTTTATTTTATTCCATTATTTATTTTTCATTACTTTATTT
TATCTATCATTCTTTTTTATATCTTTTTTTTTTCTTTTAATATTTTATCT
CTACATTCTTTCCCTATTTCTTTTCTTTTTCTATTTTTTTTTTCTTATTT
GTTTATCCTTTTTTCTTTTTTTTCTTTATTTTATCTATTTATTTATCCTC
TCTTTTTTTATTCCTTCTATCTCTTCTTCTCATTATCTTTTTTTTCTTTT
CTATTATTTCTTGTTTTATCTTTATTTTTTTCTTTTTTAATTCTTTACTA
TTTCTTTATTTTTTCTTAACTTTTTCATTTTATCTTCTTTTTGTATATTT
CTATCACTTCAACATCATATCTCCTTTACTCTTTTTTTACTTATCCTTAC
TTATCAATTTATTTTTTTACACTTTACTTACTATACCTAGATATAA
NNTTAAGACGGNTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGGCTGGACTGGTCTACAGAAATAATTCCA
GGACAACAAGGGATACACAGAGACCCCTCTGTCTTGAAAAACAACAAAAA
CAAAGAAACAAAGCAACAAAGCAACAAAAAAGATTAATGATACATACTCA
GGTTAATGTTTGTTGTGAAGGTAGAAAGGCATTTTAACTCTTAAAGAGAA
GTGCCTTCTGGTGCTGCTGTTAATGAACATTCACTTGGTGATTTAGAATG
TTGCAGAAATGGTAGAGGAAGCATAAAATTCCTTACTTTGTGACTTTAAT
TTTTTATATTTTATATATTTCCCTTCAACAGTGTTTCATAAATATAATTT
AAATATCACTGTGGGAAGTTTTTCTTTTAATTATTTCATGGTAACTATGT
CAGTTTTTTTTTTTCCACCCATATTAGAACACATTATTCAAACAAAAAAG
AACCTAGTTGTATGCCAAACACTATGTGATATATTGGGGTTTTAGATTTG
TGTGAAATATAGTTGTTTCTCTTCTCTTTTTCTTTTTTTTTCTTTTTTTC
TTCTCCTTTCTTTTTTTTTTTCTTCTCTATTTTTTTTCTTTTTTCTTCTT
CTTTTTTTTTTTTATCTTCTTTACTTATTTATTTTATATTATTTTTTTTC
TCTTTTTTTATTATTTTTTATTCTTCTTATATTTTTTATATTTTTCATTT
TAATTTCTATCCTTCTTACTCTATACATTTTCTTTTTTTTTTTTTTTTTC
TTATTTTTTATATATTTTATTTTTATTATATTTTTTTATTATCTTTCTTT
TTTATTTCATTTTTCTTTTTTTATTTTATTTTTTCTTCCTTTTATTTCTA
TATCTTCCTTTTTCTAATATTTTTATTATTCTTTCTATTTTATTTATTTA
TTTTTATTATTACACTTTATTCTTTCCTTAATTTTCTACCTCTCTTCTTA
TTTTTACTTAATCTCAAAATTTTTACTTATTATTTATTTACTATTTTTTT
TTTTTTTATTTTTATTTATTTTTTTTTACTTCTATACAATTCTACTCCTT
ATTACTTTTCTTCTATTTANCTTTCATTATATTATTATTTTTCTAACATA
TATTTTCACATTACATACTATCACTATTTTATTAAATACTAATTTATCTT
ACCTTCTAATATTNTATCTTTCTACACAATATATTTCCTTAACACTATTT
CTATACTCTATCATTCATTATCATTACTACAACTATAATATTATTTTTTT
ATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_h10.g1 MSMg01no207_h10.g1 CHROMAT_FILE:
MSMg01no207_h10.g1 PHD_FILE: MSMg01no207_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:26 2005
         (385 letters)



>mm_chr1_162639244_162640028
          Length = 785

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggctggactggtctacagaaataattccaggacaacaagggatacacagagacccctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 554 aaggctggactggtctacagaaataattccaggacaacaagggatacacagaga-cactc 496

                                                                       
Query: 61  tgtcttgaaaaacaacaaaaacaaagaaacaaagcaacaaagcaacaaaaaagattaatg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgttttgaaaaacaacaaaaacaaagaaacaaagcaacaaagcaacaaaaaagattaatg 436

                                                                       
Query: 121 atacatactcaggttaatgtttgttgtgaaggtagaaaggcattttaactcttaaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 435 atacatactcaggttaatgtttgttgtgaaggtagaaaggcatttcagctcttaaagaga 376

                                                                       
Query: 181 agtgccttctggtgctgctgttaatgaacattcacttggtgatttagaatgttgcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtgccttctggtgctgctgttaatgaacattcacttggtgatttagaatgttgcagaaa 316

                                                                       
Query: 241 tggtagaggaagcataaaattccttactttgtgactttaattttttatattttatatatt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgttagaggaagcataaaattccttactttgtgactttaattttttatattttatatatt 256

                                                                       
Query: 301 tcccttcaacagtgtttcataaatataatttaaatatcactgtgggaagtttttctttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcccttcaacagtgtttcataaatataatttaaatatcactgtgggaagtttttctttta 196

                                   
Query: 361 attatttcatggtaactatgtcag 384
           ||||||||||||||||||||||||
Sbjct: 195 attatttcatggtaactatgtcag 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)