Query= MSMg01no207_j05.b1 MSMg01no207_j05.b1 CHROMAT_FILE:
MSMg01no207_j05.b1 PHD_FILE: MSMg01no207_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:41 2005
(338 letters)
>mm_chr1_132591491_132592228
Length = 738
Score = 472 bits (244), Expect = e-137
Identities = 307/348 (88%), Gaps = 34/348 (9%)
Strand = Plus / Minus
Query: 3 ctggacctggtgactgcaaacaaaaaaaacaggagaacagcaacaaatgacctttgagca 62
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 387 ctggacctggtgactgcaaacaagcaaaacaggagaacagcaacaaatgacctttgagca 328
Query: 63 gtcagacgtgtacctgtgttcaaggctgagattagataacctatctaaaggcttgttcct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtcagacgtgtacctgtgttcaaggctgagattagataacctatctaaaggcttgttcct 268
Query: 123 ggagaagactgaatcttcctctctcaggagccattgagtacatgtggctcttcatctaga 182
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggagaagactaaatcttcctctctcaggagccattgagtacatgtggctcttcatctaga 208
Query: 183 gtgagtatatatatatatatatatatatatatatatatatatatatatacacacatatac 242
|||||||| ||| | | |||||||||||||| |||||||||||
Sbjct: 207 gtgagtatgtatgtgtgtatatatatatata------------------cacacatatac 166
Query: 243 acacatatacacacatacacatacatacatatatatata--cacatacatacata----- 295
| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 165 a----tatacacacatacacatacatacatatatatatatacacatacatacatacatat 110
Query: 296 -----tatatatatatacacacatgtacaagccacaataactagaagg 338
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atatatatatatatatacacacatgtacaagccacaataactagaagg 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no207_j05.g1 MSMg01no207_j05.g1 CHROMAT_FILE:
MSMg01no207_j05.g1 PHD_FILE: MSMg01no207_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:41 2005
(767 letters)
>mm_chr1_132531949_132533109
Length = 1161
Score = 1319 bits (682), Expect = 0.0
Identities = 744/768 (96%), Gaps = 8/768 (1%)
Strand = Plus / Plus
Query: 1 acagatggccgttgtagtcttcatggtcatcagtcctttaatcgtccttctttcaggctg 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 201 acagatggctgttgtagtcttcatggtcatcagtcctttaaacgtccttctttcaggttg 260
Query: 61 gagtaaggt-cagagagacttcatgacttcccatcacagaggtgatggcttgcccatcgc 119
||||||||| || ||||||| ||||||||||||||| ||||||||||| ||||||
Sbjct: 261 gagtaaggtcca-agagactacatgacttcccatca------tgatggcttgcacatcgc 313
Query: 120 cacagttaacaggaggctgggtatcgttccgtgggtagcctagactgggctggatctgtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 314 cacagttaacaggaggctgggtatcgttccgtgggtagcctagactgggctggatgtgtg 373
Query: 180 tagaaaggggtatgaggaatgtttacagtaactctgaactctaaggacatgggtgatgtg 239
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 374 tagaaaggggtatgagaaatgtttagagtaactctgaactctaaggacatgggtgatgtg 433
Query: 240 cacgtgtgagacaatgagagactgagcagtctagggacacaacagtgtgagtgagccaaa 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cacgtgtgagacagtgagagactgagcagtctagggacacaacagtgtgagtgagccaaa 493
Query: 300 gtgaattgtgtacctcagatttttaaataaatgtattattaattgtatatagaagtaagt 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtgaattgtgcacctcagatttttaaataaatgtattattaattgtatatagaagtaagt 553
Query: 360 ggatgacaagagcaaaattgacttttattttacacattcaaaatgtacacgttgcattca 419
||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct: 554 ggatgacaagagcaaaattgacttttaattcacacattcaaaatgtacacattgcattca 613
Query: 420 gaaaagcaaatttatgagccacaaaatgatagtttcatagatttactacctattaattat 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 614 gaaaagcaaatttatgagccacaagatgatagtttcatagatttactacctattaattat 673
Query: 480 aacataattaatgaattcttctaagcagatatttattatcatgaacattggtgccagcat 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aacataattaatgaattattctaagcagatatttattatcatgaacattggtgccagcat 733
Query: 540 tacaaaggttggtaactgcaggcaatctgtttggaactgaagtcagacagccaatgagac 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 734 tacaaaggttggtaactgcaggcaatctgtttggaactgaagtcagaaagccaatgagac 793
Query: 600 gctacttcctccttaagagaacatacagtcataactcccggtcagtgtgcttcagtgtgt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gctacttcctccttaagagaacatacagtcataactcccggtcagtgtgcttcagtgtgt 853
Query: 660 ttctccttttgtatctggagctgtagtagttcaacctccagagtcagcttgtagatctcc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttctccttttgtatctggagctgtagtagttcaacctccagagtcagcttgtagatctcc 913
Query: 720 agagccattttcacatcgtgtgaatttggcacatactgcatggtcttg 767
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 agagccattttcacatcgtgtgaatttggcacatactgcatggtcttg 961
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1161
Length adjustment: 10
Effective length of query: 757
Effective length of database: 1151
Effective search space: 871307
Effective search space used: 871307
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
