BAC Information

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BAC

Clone NameMSMg01-208C21
Chromosome1 (Build37)
Map Location 71,144,813 - 71,145,078
singlet/doubletsinglet
Overlap geneBard1
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
Downstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208C21.T7 (MSMg01no208_c21.b1)MSMg01-208C21.TJ (MSMg01no208_c21.g1)
ACCAG391144AG391145
length673714
length of high quality
(start - end)
286 (9 - 294)---
definitionCHROMAT_FILE: MSMg01no208_c21.b1 PHD_FILE: MSMg01no208_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:54 2005CHROMAT_FILE: MSMg01no208_c21.g1 PHD_FILE: MSMg01no208_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTATAGGGAGAGGATCCGCGGAATTCCTTCCCTGGTCTCCCTCAGT
GACCCTTTCCTAAAAGTATAAAGTACAAATCCTTTCATCCCAAATTGCTT
TTGGTTATGGTGTTAATCACAGCAACAGGGAAACAAACTAGAATAATAAT
TATACAAACTAATAAATAAACTAATAAACTTGGTTTTTAGGCTACTTGTC
CCTCAAGATCTGATTGGTTTTACGTCTTATACCATCTAACCCACTCCCTG
TTTATTCTAACATTCCTAGCTTAGTCATTTGCTAATATCATCTTTTTTTC
TACTGNGGCCAATTAATAAAAATGTANTTTTTTTGGTATTTTCCAAAGCA
AAGCCCAAGAANTTTGNTCNAANATANAGAGNTANGGNACGCACACCCCT
ACCNTCAACCTGGGGGGGGGGAGGTTACCCTAAACTGGGTATCCTTTGTA
CTCCTTAAAATTGAGCACATAAGCCTTACAGGGAGAAAATGAACTGCCGC
TTCTATGCCTCAGTGACTTCTTGTTCTAATGAACCAGTGCCACAGCACAC
CAGAGGGAGCAATCATCCTACTTAAGGATCACTGGCCTGTAAGATCACTC
TGAAGAGTCAAAACTCCTATTGAGTTTTAAGCGAAATGCTTAGAGCCAGG
AGATCTGTGCTTCACCTTAAGAT
AGGGAAGAGGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTATTTTTGCAGGCCTGTGATGCAGTTGTGAT
GATCTTTATTTAAACTGTTTGAGGGGGACACATATCCAATAGAAACCACT
GGGAAGAATATAGCACTCTGAAATAAGACCCATATATTGAGGCATTCAAA
TTTTAAGCAAGTAATGAGGGCTATTGTGGTGCTTTGAATAAAAAGGGCCC
CAGTGGAATCATACGGTTGAATGTTTGGCCCCCAGTTGATGGTACCATTT
AGGAAAAGTTTTATTATGTTGCTATATTGGAGAAGGGGTTACACGGAATT
TTGGTGGTTTCCCAAACAAAGCCCCCTTTGTTACCAGTTAGCTCTCTTTT
TCCCTCTACCCCCCCATAAAAAAAATGTTGGGGCGGGGGGAGGGTTCAAA
AGCCCTGCCAGCCCACTTGTCTGCCTTACCCCCTGAATTCATTAAACCCA
GTAAGCTTTTTCTTAGACAAGTTGCCTTGGTAACTGAGCCCCTTGACAGC
GCTAATAAATGAAACAAAGACAAGGGGGGTGAATGGTGTTAATAAGTGTA
AAAATGGTATTTGTGGGTAAGTTGTGCCTGATTTGTAACCCACATGTATA
TTTTCACGCGCTGCCAATGAATTTTATTCGCTTTTAGCTAGTTATGCAAA
AAATATTTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_c21.b1 MSMg01no208_c21.b1 CHROMAT_FILE:
MSMg01no208_c21.b1 PHD_FILE: MSMg01no208_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:54 2005
         (286 letters)



>mm_chr1_71144597_71145282
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 265/266 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattccttccctggtctccctcagtgaccctttcctaaaagtataaagtacaaatcctt 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattccttccctggtctccctcagtgaccctttcctaaaagtataaagtacaaatcctt 276

                                                                       
Query: 77  tcatcccaaattgcttttggttatggtgttaatcacagcaacagggaaacaaactagaat 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcatcccaaattgcttttggttatggtgttaatcacagcaacagggaaacaaactagaat 336

                                                                       
Query: 137 aataattatacaaactaataaataaactaataaacttggtttttaggctacttgtccctc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aataattatacaaactaataaataaactaataaacttggtttttaggctacttgtccctc 396

                                                                       
Query: 197 aagatctgattggttttacgtcttataccatctaacccactccctgtttattctaacatt 256
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 397 aagatctgattggttttacgtcttagaccatctaacccactccctgtttattctaacatt 456

                                     
Query: 257 cctagcttagtcatttgctaatatca 282
           ||||||||||||||||||||||||||
Sbjct: 457 cctagcttagtcatttgctaatatca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)