Query= MSMg01no208_d03.b1 MSMg01no208_d03.b1 CHROMAT_FILE:
MSMg01no208_d03.b1 PHD_FILE: MSMg01no208_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:56 2005
(298 letters)
>mm_chr1_21199324_21200021
Length = 698
Score = 485 bits (251), Expect = e-141
Identities = 287/299 (95%), Gaps = 2/299 (0%)
Strand = Plus / Minus
Query: 1 gcctggtacggggttatatgcctttaatcacagggctagggtaggtttaggtc-ggcaaa 59
|||||||| |||||||||||||||||||||||||| ||||||||| ||| | ||||||
Sbjct: 675 gcctggtatggggttatatgcctttaatcacagggttagggtaggcagagg-caggcaaa 617
Query: 60 tctctgggaatccaaggtcggcttgggctatgtagcaagtaccaacacagtcagagctat 119
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 tctctgggaatccaaggtcggcttgggctgtgtagcaagtaccaacacagtcagagctaa 557
Query: 120 gtattgtgaccatgacacccaaaataacaaacaaacaaacaacaaacaagcaagcaaaat 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atattgtgaccatgacacccaaaataacaaacaaacaaacaacaaacaagcaagcaaaat 497
Query: 180 atccatcagccaccaccaaaatctccaaaccaatccatacaattgaggcctccatcttgt 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atccatctgccaccaccaaaatctccaaaccaatccatacaattgaggcctccatcttgt 437
Query: 240 gttcttgcccttgttactgtgcagactcagataatgcaaagattctggttgtgtgagga 298
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtgcttgcccttgttactgtgcagactcagataatgcaaagattctggttgtgtgagga 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_d03.g1 MSMg01no208_d03.g1 CHROMAT_FILE:
MSMg01no208_d03.g1 PHD_FILE: MSMg01no208_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:56 2005
(284 letters)
>mm_chr1_21054652_21055335
Length = 684
Score = 501 bits (259), Expect = e-146
Identities = 277/283 (97%)
Strand = Plus / Plus
Query: 1 ttttgtggctccctcttgcacaggctgacagcattgctgtctacatctccggtatggttg 60
|||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ttttgtggctcccttttgcataggctgacagcattgctgtctgcatctccggtatggttg 260
Query: 61 gctcatctttcactaccacgtcctttcctagccttcccactcaaacacacactgaaaggc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcatctttcactaccacatcctttcctagccttcccactcaaacacacactgaaaggc 320
Query: 121 aggtgtggtgtgcaccacacctgtgatcccagcatcgggaggctgaggcaggaggatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgtggtgtgcaccacacctgtgatcccagcatcgggaggctgaggcaggaggatcat 380
Query: 181 gtgttcaaggccagcttcaacttcaaagcgagaccctttctaaacagacacaaatgccca 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gtgttcaagaccagcttcaacttcaaagcgagaccctttctaaacagacacaaatgtcca 440
Query: 241 agtgcacaccttgactctctccataacaaatctgcctcgctga 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgcacaccttgactctctccataacaaatctgcctcgctga 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
