BAC Information

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BAC

Clone NameMSMg01-208E08
Chromosome1 (Build37)
Map Location 162,066,493 - 162,151,866
singlet/doubletdoublet
Overlap geneTnn, Mrps14, Cacybp, Rabgap1l
Upstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208E08.T7 (MSMg01no208_e08.b1)MSMg01-208E08.TJ (MSMg01no208_e08.g1)
ACCAG391208AG391209
length729753
length of high quality
(start - end)
308 (46 - 353)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no208_e08.b1 PHD_FILE: MSMg01no208_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:02 2005CHROMAT_FILE: MSMg01no208_e08.g1 PHD_FILE: MSMg01no208_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,066,493 - 162,066,797)(162,151,627 - 162,151,866)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTCCCGATGTCCGTGATAATCTGATCTCTCTTATCTATTGTC
AGTGTAGACTCAGTGTTATGCACATACGTGTTCCTTCCCAGGATTTTATA
AATGTATTCTTGGCTCTCTGCGTCCCACTCACATAGTTTCAACTACTATT
TAGCTTTGTTGCTAATAGTCAAAGGAACTTGTCCAAGAACCTGGTCAGGG
TTTTGTTTTGTTTTATTTTGTTCCTGTCTAGCAGCTGTAACAGCTCAATA
AACCCTTTTATTTGGAGACCCTTCAGTTTTAAGAGTTTTGTTTTAACAAG
TTCCTTAGTTATTTTCGCCCCGCGGACCCAANTGAACTACATTCCCTTCC
TGCGTACGCGCCCCCCCCACAAAAAAAAAAGATGCTCTTTCTCAGCTTGC
TAGAAACAAAAAATTTGGAGAAAACAAATTTTTACTCTCCTAATTTAACT
CATGGTCTTCCCTGACCTCAGAAACGATAGGATCTTCCTTCTTTTTTATT
TCATTAGCGCACATACCCTTTATTTATTACGACATCCTGTTGACATGTCT
CATCCTGTATGTTAGTACGAAACTACTAACAATATAAACTCTCTCCACAT
GCTTCCTATTCTCCCTGCGTATCCATTACTCTGTAAAGGGGTTCCTACTT
ATTTCTTTCTGCCCATCGACCCTCTATCG
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTATAAAAGATAAACCAGCC
AAGTATCCCAAGATATTTTCAAACATGGTAGTTTCTTTCATCCTTCCCTA
AAAGTTACATGATAGTAAACACTCCTGAAATGCTGACATTTGCAGCATCT
AAAAGGTGATCGATCCTTCCTCTTTTTGTTGAGTACTGTAAAATACAATG
AAGATTCAACCCATTGGCTTTTATAACTTGGAGGTCTCTTTTAGTATATT
CTTGAAAGCTGAAAGACACTATTTTAGATTTGGAGTGCATATGTTTAGTA
CACATCCTGATTTTTTTCCCACCCCCGCCCCCCCGCTTTTTTAGAACTTG
TAATTTATTGTAAATATTTTCCCCCCCAAAAAAAATACAGTATGAGTGCC
TATCAGAAACAGTAATGTTAAAGCCACATAGGCCACAACCTATCTTTTCA
TACAAAATCTGTCTTCCTTTCACTGATTATTAATTACGTAACTTCTTCTT
TCCGGTCTTCATTTAATCTCCCCTGTTATAGCTGTAAAATAATCCTTTTT
GTACTGTTTGTATCTCTCCCTCCCTATTTTTGCTCCACCTCTTCTTAGCA
CTTTATTTTCCCCTATTATTTTCTCTGGCTTTAATTTATCTTTTTCATTA
TTTAGCTTTTTTACTCCTCCCTTTTAATTATATTCTATTTATGACGCCCT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_e08.b1 MSMg01no208_e08.b1 CHROMAT_FILE:
MSMg01no208_e08.b1 PHD_FILE: MSMg01no208_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:02 2005
         (308 letters)



>mm_chr1_162066290_162066997
          Length = 708

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatctcccgatgtccgtgataatctgatctctcttatctattgtcagtgtaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatctcccgatgtccgtgataatctgatctctcttatctattgtcagtgtaga 263

                                                                       
Query: 64  ctcagtgttatgcacatacgtgttccttcccaggattttataaatgtattcttggctctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcagtgttatgcacatacgtgttccttcccaggattttataaatgtattcttggctctc 323

                                                                       
Query: 124 tgcgtcccactcacatagtttcaactactatttagctttgttgctaatagtcaaaggaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcgtcccactcacatagtttcaactactatttagctttgttgctaatagtcaaaggaac 383

                                                                       
Query: 184 ttgtccaagaacctggtcagggttttgttttgttttattttgttcctgtctagcagctgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtccaagaacctggtcagggttttgttttgttttattttgttcctgtctagcagctgt 443

                                                                       
Query: 244 aacagctcaataaacccttttatttggagacccttcagttttaagagttttgttttaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacagctcaataaacccttttatttggagacccttcagttttaagagttttgttttaaca 503

                
Query: 304 agttc 308
           |||||
Sbjct: 504 agttc 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no208_e08.g1 MSMg01no208_e08.g1 CHROMAT_FILE:
MSMg01no208_e08.g1 PHD_FILE: MSMg01no208_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:02 2005
         (240 letters)



>mm_chr1_162151427_162152066
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtataaaagataaaccagccaagtatcccaagatattttcaaacatggtagtttctt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttgtataagagataaaccagccaagtatcccaagatattttcaaacatggtagtttctt 381

                                                                       
Query: 61  tcatccttccctaaaagttacatgatagtaaacactcctgaaatgctgacatttgcagca 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatccttccctaagagttacatgatagtaaacactcctgaaatgctgacatttgcagca 321

                                                                       
Query: 121 tctaaaaggtgatcgatccttcctctttttgttgagtactgtaaaatacaatgaagattc 180
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 tctaagaggtgatcgatccttcctctttttgttgagtactgtagaatacaatgaagattc 261

                                                                       
Query: 181 aacccattggcttttataacttggaggtctcttttagtatattcttgaaagctgaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacccattggcttttataacttggaggtctcttttagtatattcttgaaagctgaaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)