BAC Information

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BAC

Clone NameMSMg01-209A04
Chromosome1 (Build37)
Map Location 111,855,251 - 111,855,537
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508
Downstream geneCdh7, LOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209A04.T7 (MSMg01no209_a04.b1)MSMg01-209A04.TJ (MSMg01no209_a04.g1)
ACCAG391704AG391705
length731737
length of high quality
(start - end)
326 (45 - 370)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no209_a04.b1 PHD_FILE: MSMg01no209_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005CHROMAT_FILE: MSMg01no209_a04.g1 PHD_FILE: MSMg01no209_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGG
CAAGCAACGAATCAGGAGCTGTCACACCATATCAGGTGCTGAAACGTCAC
GCTGTGGGTTATAAAAACAGCGCCATTTTCCCGGTTCGGAATCTTCCTGA
GAAGCAAGCAATAAAGCTCTTGCCGCAGAAGATTCTGGTTTGTTGCGTCT
TTCTTGCTGGTCGAGTGGGACGCAATAGATCCATCCCATAATCAGCCTCC
AAACACTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCT
GATATAGCTGTCTCTTGTGAGACTATGCTGGGGCATGGCAAACACAGAAG
TGGATGCTCACAGACAGCTATTGGATGGATCACAGGGCCCCCAATGGAGG
TGCTAGATAAAATACCCAAGAAGCTAAAGAGATCTGCAACCCTATAGGTG
GAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC
ATATGTATCAAAAGATGGCCTATTCGGCCATCACTGGGAAGAGAGGTCCA
TTGGACTTGCAAATTTTATATGCCCCATTACAGGGGAACGCCAGGGCCCA
AAAGTGCGAGTTTCTCATAAGAGAAACTTTACTAACGCTCAAAGCACATA
ATGCATCTCATACCATAATAGTGCGAGACTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTATTTTTATAATCATCAACAC
AGATCATAGGAGGAGACTGCTGCTATAATTCTTATGAAGTTGAATTGTAT
ATTGCAAGTTGTTAAAACTAAATCACATTCTAGAGCAAAAATACAAATAG
AAAAATAAAATGTCTCTGAGTTAAGAAACAAACCAAGTACTGTGCTTAAA
ATGGGCTCCATTTCTTTCACGGTTGTCTCTGATAGTTTGTCTTGTCCTGC
ATGTGATAGCATCTCATAGCTCAGGCTGGACTCATATTCACTTTCTAGGT
AAGGATGACTTTGTATTGCTAACACTCTCACTCTGCCTTTACTTTCTACA
TGCTAGAATTATAATAATATGCTGAGAAACCTACTTTGGCTTCTGATTTG
ATGCTGTTTTCTGTTATAGTGTCAAGGTGAAGTTGCACAATGAATAATCC
CAACATAATAGTCAGATAAATTATATCAAAGAAATATAATTCCCATAAAT
TAAGTTGCTTTTTATACAGATAACACAGTTTCAACTATTAAACACAAAAC
AAGTGCAGTAAGTAAATAAATAAATAAATAAATAAATAAAACTTTTTGTA
CACACACTAAAAGTAAATCAAGGAAGAAACAAAAAACTTTGCTACATATA
TTATAACTACTGTTTGTCATATGATCATAGATTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_a04.g1 MSMg01no209_a04.g1 CHROMAT_FILE:
MSMg01no209_a04.g1 PHD_FILE: MSMg01no209_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:00 2005
         (287 letters)



>mm_chr1_111855051_111855737
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttatttttataatcatcaacacagatcataggaggagactgctgctataattcttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttatttttataatcatcaacacagatcataggaggagactgctgctataattcttatg 260

                                                                       
Query: 61  aagttgaattgtatattgcaagttgttaaaactaaatcacattctagagcaaaaatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttgaattgtatattgcaagttgttaaaactaaatcacattctagagcaaaaatacaa 320

                                                                       
Query: 121 atagaaaaataaaatgtctctgagttaagaaacaaaccaagtactgtgcttaaaatgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaaaaataaaatgtctctgagttaagaaacaaaccaagtactgtgcttaaaatgggc 380

                                                                       
Query: 181 tccatttctttcacggttgtctctgatagtttgtcttgtcctgcatgtgatagcatctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatttctttcacggttgtctctgatagtttgtcttgtcctgcatgtgatagcatctca 440

                                                          
Query: 241 tagctcaggctggactcatattcactttctaggtaaggatgactttg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctcaggctggactcatattcactttctaggtaaggatgactttg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)