BAC Information

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BAC

Clone NameMSMg01-209G06
Chromosome1 (Build37)
Map Location 170,268,231 - 170,371,438
singlet/doubletdoublet
Overlap genePbx1
Upstream geneAldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209G06.T7 (MSMg01no209_g06.b1)MSMg01-209G06.TJ (MSMg01no209_g06.g1)
ACCAG391933AG391934
length694686
length of high quality
(start - end)
310 (36 - 345)284 (58 - 341)
definitionCHROMAT_FILE: MSMg01no209_g06.b1 PHD_FILE: MSMg01no209_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:30 2005CHROMAT_FILE: MSMg01no209_g06.g1 PHD_FILE: MSMg01no209_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,371,133 - 170,371,438)(170,268,231 - 170,268,513)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAGG
AGGCCACTGTGACTTAGGAACTGCCAATGACATGGCAAAGTGTCTCTCAA
GTCCCTCCAAGGACCCTCAAGCTCAGGGTTCATCTCCCACATCTTTGCAC
CATTGGGAGTCATGGAAACTTTAAGAGGCAGGAACTAATCAGAGGAAGTT
CAATTGTAATGGGATGTATGTGTTTTTAAGCTATTTCCTGTGAATTGAAC
CTTTCCCTCAAAGTTGATCAGAATTTTCTAGCCCAGGAAATTTGCAAGAC
TTGAGGTGTTCAGAAAGTGTGTCACCTAGGCAGATGCCAACAAGATTTTG
TTGTACCCCCNTTCGTACCCCTGTCTCCTGCAAGGCTCTGCCAGTGCCTG
ACAACCCCCAAATGGAAGCTCATAGTCATCCATTGGACGGAGCACAAGGT
CCCCAATAAAAGAGCCAGAGAAATACCCAGGGAGCTGAAGGGGACTGAAG
CCCCATAGAAAGAACATCAATATGAACTAACCAGTAGTACTCTCAGAGCT
TTTTGGAGCTATCTCACCAATCAAAGTAAACACATGGTGGAACTTGTGGC
TCTAGCTATATATATAGCAGAGGATGGTCTAGCCGTTCATCAATGGGAAG
AGAGGCCCTTGGTCCTGAGAAAGGTCCATGCCTCCGCACAGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTCACAGATGTACTAAGCATATTTCCTGTCTGAATTATGTGTA
CCTTAAAAAGATCCTTGATTCTTGTAACTACTGAAGTCGGATATTCCATC
GAGATGCTGTACTTCCCTGGGACATTCTGCAGTTTCCACGAGTCTCAGCA
ATTGGCCAGTTACATAGTTACATAGGTACGAGACCAGTATTTTTGGGACC
TGTTTCAGCATTAAGTTCCTCTACCAACAGACCCCAAGAATAATGCAATA
AACTAAACAGACCCATTTCTGGCCAGTTAATCAGATAAATTTTTTTTGCC
CCCCCCCCCCCCAAAGGAGCATTTTCATTCTTCACCTGTAGTTGGTGCCC
AACCACCAATGTATGATCCTCAATAGTGAAAGTATTATGGTAAATAACTA
TATTGCTTCTTATTCCAAATTATCTGCTGACTCTTAAGACAACCGTGGAC
TTGTATATCATAAGTAAATAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAGGTAAATTGATAAAGATTTTAAAAACTACTTCAACAAACCC
TTATATTTTATTATAATAATAATATACATTTATTATAAAACCAATATGTG
CATTTTATGTAAGACCATGTGGACTAACAGAGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_g06.b1 MSMg01no209_g06.b1 CHROMAT_FILE:
MSMg01no209_g06.b1 PHD_FILE: MSMg01no209_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:30 2005
         (310 letters)



>mm_chr1_170370929_170371638
          Length = 710

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaggaggccactgtgacttaggaactgccaatgacatggcaaagtgtctctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcctaggaggccactgtgacttaggaactgccaatgacatggcaaagtgtctctca 451

                                                                       
Query: 65  agtccctccaaggaccctcaagctcagggttcatctcccacatctttgcaccattgggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agtccctccaaggaccctcaagctcagggttcatctcccacatctttgcaccattgggag 391

                                                                       
Query: 125 tcatggaaactttaagaggcaggaactaatcagaggaagttcaattgtaatgggatgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcatggaaactttaagaggcaggaactaatcagaggaagttcaattgtaatgggatgtat 331

                                                                       
Query: 185 gtgtttttaagctatttcctgtgaattgaacctttccctcaaagttgatcagaattttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgtttttaagctatttcctgtgaattgaacctttccctcaaagttgatcagaattttct 271

                                                                       
Query: 245 agcccaggaaatttgcaagacttgaggtgttcagaaagtgtgtcacctaggcagatgcca 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 270 agcccaggaaatttgcaagacttgaggcgttcagaaagtgtgtcacctaggcagatgcca 211

                 
Query: 305 acaaga 310
           ||||||
Sbjct: 210 acaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_g06.g1 MSMg01no209_g06.g1 CHROMAT_FILE:
MSMg01no209_g06.g1 PHD_FILE: MSMg01no209_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:30 2005
         (284 letters)



>mm_chr1_170268031_170268714
          Length = 684

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcacagatgtactaagcatatttcctgtctgaattatgtgtaccttaaaaagatccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacagatgtactaagcatatttcctgtctgaattatgtgtaccttaaaaagatccttg 260

                                                                       
Query: 61  attcttgtaactactgaagtcggatattccatcgagatgctgtacttccctgggacattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttgtaactactgaagtcggatattccatcgagatgctgtacttccctgggacattc 320

                                                                       
Query: 121 tgcagtttccacgagtctcagcaattggccagttacatagttacataggtacgagaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagtttccacgagtctcagcaattggccagttacatagttacataggtacgagaccag 380

                                                                       
Query: 181 tatttttgggacctgtttcagcattaagttcctctaccaacagaccccaagaataatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttttgggacctgtttcagcattaagttcctctaccaacagaccccaagaataatgca 440

                                                      
Query: 241 ataaactaaacagacccatttctggccagttaatcagataaat 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaactaaacagacccatttctggccagttaatcagataaat 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)