BAC Information

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BAC

Clone NameMSMg01-209H11
Chromosome1 (Build37)
Map Location 65,865,395 - 65,966,925
singlet/doubletdoublet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209H11.T7 (MSMg01no209_h11.b1)MSMg01-209H11.TJ (MSMg01no209_h11.g1)
ACCAG391979AG391980
length761689
length of high quality
(start - end)
270 (46 - 315)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no209_h11.b1 PHD_FILE: MSMg01no209_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:36 2005CHROMAT_FILE: MSMg01no209_h11.g1 PHD_FILE: MSMg01no209_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,966,660 - 65,966,925)(65,865,395 - 65,865,676)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAACTATATGCATAAATTTAGTATGGTTGGGTTATAGCTAATA
CTAAAGATGTTTTTGAGAGCTATATGGAAACCTACTATTTCATAAGCTTC
ATAAAAGTGCCTATGTATATATGTATATATATGTGTGTGTGTGTGTGTGT
GTACTTATATATACACATGTATATATATGCACTTGTATATATACACAGTT
GTGTGAAACATGAAATATATTTGTATACGTATATACCTATGTATATATTT
ATAGGTGTGTGTGTGGATGTTTTTTTTAAACACACCGACAACATGTCTGC
AACTTTTTTTTTTTCCCCCCCCCCCCCCCTTCTCATGTTATGACTACTCT
TTTATTTTCCCTTTTTTCCCCCAACAAAAAAACCCCTGCGTGGGGGTTGT
TCCTACCCCCACCCTTTACCCTATCCCATCTATTTATCCTTCCGTTCCCC
TTTCTATTTCTTTTTTCTTACCTGCCCTTTTTTTTTATCCCACTTTTTTC
CCCATTTTTCTTTTTATTCCTGTTCCGCGTTATTTTTTCCTTTACCATCA
TCCCTCTTTCATCACATTCTTTTTTCTCCTCTTAAAGCTTCCTCTTCACC
CACCATCCTCCTTTTCTCTCTTTTCCTCTTTCCCCTCCTTTTTCCCTTTT
CACGCACCCCTTTATTCCTCTTCTTCTCCCCCCCTTTTCTTCCTCTTTTT
CTCCCTCCTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTAACCCA
TAAAACCCCCTAGCTTTCAATCCTCGTGGCCGACATCCGTTATCTCCTGT
GTGGGATGCATGTTGGTTCGGAGCTCCGTCATTAAACGTCCTCATGTAAT
TACATCAAGAGATGGTCCTTGATTTTTTGGGTGCACGTCGAATTGGGAAC
AACATTATCAATGTTGTTCAGTTTCTTAGAATTAAAAGTTTAAGTTAAAA
GTTCAACATATTAACCAAAGAAACTGCTATTGAATGTTAGATGTTATTTT
TTTAGATGTTTTATAAAGGACACCCCACCTGTATTTCTTTCCTGATTTCC
ATATAGCAGGAGTTGACTGAAATGATTACTGTTCGTCTTAGATATTTTCT
TTTCATATGTAGGAAGTGCTCAGTAATTAGAACTAGAGTACCAATTAATT
ATCTGAGCCAAAGTGCTTCTGTGTAGAGATATACTTATAGACTTTCACTT
ATAGGCTTTATAAGTGAAAATATTCACGTAAACAAGAAAGATACATCACT
GTTAGTGTCATCAGGGTGTGGTAGTTTCAGTGTGCTGGATTCTTGATAAA
GTAAGGCTAGTGGGAAGATTTATAATGAAGGCCTGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_h11.b1 MSMg01no209_h11.b1 CHROMAT_FILE:
MSMg01no209_h11.b1 PHD_FILE: MSMg01no209_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:36 2005
         (270 letters)



>mm_chr1_65966609_65967278
          Length = 670

 Score =  514 bits (266), Expect = e-150
 Identities = 266/266 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaactatatgcataaatttagtatggttgggttatagctaatactaaagatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaattcctcaactatatgcataaatttagtatggttgggttatagctaatactaaagatg 258

                                                                       
Query: 65  tttttgagagctatatggaaacctactatttcataagcttcataaaagtgcctatgtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttttgagagctatatggaaacctactatttcataagcttcataaaagtgcctatgtata 198

                                                                       
Query: 125 tatgtatatatatgtgtgtgtgtgtgtgtgtgtacttatatatacacatgtatatatatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tatgtatatatatgtgtgtgtgtgtgtgtgtgtacttatatatacacatgtatatatatg 138

                                                                       
Query: 185 cacttgtatatatacacagttgtgtgaaacatgaaatatatttgtatacgtatataccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cacttgtatatatacacagttgtgtgaaacatgaaatatatttgtatacgtatataccta 78

                                     
Query: 245 tgtatatatttataggtgtgtgtgtg 270
           ||||||||||||||||||||||||||
Sbjct: 77  tgtatatatttataggtgtgtgtgtg 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no209_h11.g1 MSMg01no209_h11.g1 CHROMAT_FILE:
MSMg01no209_h11.g1 PHD_FILE: MSMg01no209_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:36 2005
         (286 letters)



>mm_chr1_65865195_65865880
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacccctaagccccttaacccataaaaccccctagctttcaatcctcgtggccgacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacccctaagccccttaacccataaaaccccctagctttcaatcctcgtggccgacat 260

                                                                       
Query: 61  ccgttatctcctgtgtgggatgcatgttggttcggagctccgtcattaaacgtcctcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgttatctcctgtgtgggatgcatgttggttcggagctccgtcattaaacgtcctcatg 320

                                                                       
Query: 121 taattacatcaagagatggtccttgattttttgggtgcacgtcgaattgggaacaacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattacatcaagagatggtccttgattttttgggtgcacgtcgaattgggaacaacatt 380

                                                                       
Query: 181 atcaatgttgttcagtttcttagaattaaaagtttaagttaaaagttcaacatattaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaatgttgttcagtttcttagaattaaaagtttaagttaaaagttcaacatattaacc 440

                                                     
Query: 241 aaagaaactgctattgaatgttagatgttatttttttagatg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaactgctattgaatgttagatgttatttttttagatg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)