BAC Information

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BAC

Clone NameMSMg01-209I08
Chromosome1 (Build37)
Map Location 75,500,455 - 75,500,752
singlet/doubletsinglet
Overlap geneAW822216
Upstream geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
Downstream geneInha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209I08.T7 (MSMg01no209_i08.b1)MSMg01-209I08.TJ (MSMg01no209_i08.g1)
ACCAG392017AG392018
length717711
length of high quality
(start - end)
298 (59 - 356)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no209_i08.b1 PHD_FILE: MSMg01no209_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:40 2005CHROMAT_FILE: MSMg01no209_i08.g1 PHD_FILE: MSMg01no209_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGTTAGGTACTTTACACTCCAGCACCACAATCCCGTGTTCCC
GACCCTCCACATCCTGCAGGCGCCGGGTGAACCGTAGGCGGGGTTCTGTA
GAAAGAGAAAGAGAGAAGGCTCAGGAGCAGGAGCAGGAGCGAGAGACTAG
CCGAGGAGGATAACACATACTTGCTCTTCCTAGCAGGCTAGGAATGGCGG
CCGAATTCCCAGCTAAGTTAGTTGGCCTAATTCCCAGCCTGACCCCGATA
TCACCTTAGACACGTCTTATAACATTTCTGGGTCTCAATCTGCTCATGTG
TTAAATGTTTTTTTCCCCCGCCCCCCCCCCTGAANCAGATTAGTGGTTTT
CAGACCGTCCCTAACCCCCCACAGTATCTCACAATTCTTCGAGGATCTGC
ATTGATTTTCATTTCAATATAGCATTCTACGCATTTCAGAACCATATTTC
GGAACTTGGAAACCTCCAGAGAGTTAACTTGCTGAGGAAAACCCGGCTTG
GCCCCACTGGCAGAAGTTTCTTTACTTTCTTGAGGACATCGCAGTTTCTC
TCTGGCCTGGCTTGTCTGATCTAGACGCACTTGAGGACCCTGTCATAGTT
TGGATACCACACCCTTGGTTAAGTGCCCCGCTGGCCCTCGGGGGAATTTC
CCAAGGTTGCTTTTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCCGTGGAACCTCACTTTCT
AGAGCTAGGGAGTTGGAGAGGGTCCTGGGCTCTCTGGTGCAGTTGGTATC
AAGAGATTCTGACTGGGGACTGGAAATGTAGCTCAGTGGGCAGAGCGCTG
GCCTTGGCCTAGCGGGAGCCCAACGGTGTGTGCCTATATAACCCAGGCGT
AATAGTGTACGCCTATAATCCCAGCACTCGGGAGATTAAAGTGGAGGATC
AGGAGGCAAATTGCGGTGCTGTTCTCAATATTATCTTCCATGTAGAAGAC
ACCTGGGTCATATATTCCAGCCCCCCTCCCTTTTTTCCTCCAGAATGTCT
GGAACTCCCAGGATGCTCTGCACCCACACGGCTGGTACTACAGCTGCAGG
GCCAGCCAGAGCACCTATACCTGGCCTCCCACAGGACGGCCACTGAGCTC
GGGGAGAAAGTCTCCAAGGTGTGGGGTCTGGCGAATGAGCCACACAAGGA
TATCGAGTGGAAAGAGCAATTTCTCCGGCTCAGCCCTTGTGCACTCTCTG
CCATCTCCCCAGACATAGCCCACCTAGAATCGAGAAAAAGTGCCCTGACC
CCACTCTTTTGCCCCAGGAATTTCAGAGCTTCGTTCTCTAAGCCCCATCC
TCATCAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_i08.b1 MSMg01no209_i08.b1 CHROMAT_FILE:
MSMg01no209_i08.b1 PHD_FILE: MSMg01no209_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:40 2005
         (298 letters)



>mm_chr1_75500255_75500952
          Length = 698

 Score =  545 bits (282), Expect = e-160
 Identities = 294/298 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaggtactttacactccagcaccacaatcccgtgttcccgaccctccacatcctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaggtactttacactccagcaccacaatcccgtgttcccgaccctccacatcctgca 260

                                                                       
Query: 61  ggcgccgggtgaaccgtaggcggggttctgtagaaagagaaagagagaaggctcaggagc 120
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggggccgggtgaaccgtaggcggggttctgtagaaagagaaggagagaaggctcaggagc 320

                                                                       
Query: 121 aggagcaggagcgagagactagccgaggaggataacacatacttgctcttcctagcaggc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagcaggagcgagagactagctgaggaggataacacatacttgctcttcctagcaggc 380

                                                                       
Query: 181 taggaatggcggccgaattcccagctaagttagttggcctaattcccagcctgaccccga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaatggcggccgaattcccagctaagttagttggcctaattcccagcctgaccccga 440

                                                                     
Query: 241 tatcaccttagacacgtcttataacatttctgggtctcaatctgctcatgtgttaaat 298
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcaccttggacacgtcttataacatttctgggtctcaatctgctcatgtgttaaat 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)