Query= MSMg01no209_i19.b1 MSMg01no209_i19.b1 CHROMAT_FILE:
MSMg01no209_i19.b1 PHD_FILE: MSMg01no209_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:43 2005
(671 letters)
>mm_chr1_62156243_62157313
Length = 1071
Score = 1232 bits (637), Expect = 0.0
Identities = 661/669 (98%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttcttcttccaaatgaaacattcccattaactaagcaccagccaatgatgtac 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ggaattcttcttcatgcaaatgaaacattcccattaactaagcaccagccaatgatgtac 808
Query: 64 actcaacccccacactcctatagattcctcaaggtttttatagtgcttgtgtgtccccag 123
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 807 actcaacccccaaactcctatagatttctcaaggtttttatagtgcttgtgtgtccccag 748
Query: 124 tgaagagagctgttttgctgaaaaccatctccagagaaagctacttttcccacactcaga 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 taaagagagctgttttgctgaaaaccatctccagagaaagctacttttcccacactcaga 688
Query: 184 ctgattgaattcctgtctatgccacctgcctgctaagcttcattccttccagtccagcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgattgaattcctgtctatgccacctgcctgctaagcttcattccttccagtccagcct 628
Query: 244 ggtgcacaaagatgccaggataggcagagggcaaaagtagaccaggaccagcagtttatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggtgcacaaagatgccaggataggcagagggcaaaagtagaccaggaccagcagtttatt 568
Query: 304 agctttgaaattagccatg-tcaatcaaaaaagaaaaaaaatttaaaaattaggcatctt 362
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agctttgaaattagcca-gatcaatcaaaaaagaaaaaaaatttaaaaattaggcatctt 509
Query: 363 cccaccccatctcacatatatattatagcaaggtacatatatacacctttattattatag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cccaccccatctcacatatatattatagcaaggtacatatatacacctttattattatag 449
Query: 423 aatattatacaatgtggtatattgtaaaagaatttgagcaagtctaaaagaaacaaaaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aatattatacaatgtggtatattgtaaaagaatttgagcaagtctaaaagaaacaaaaga 389
Query: 483 ctgaaaaatcatattgctgttaaataattattaatagttatttaaaaataaaataactag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgaaaaatcatattgctgttaaataattattaatagttatttaaaaataaaataactag 329
Query: 543 ctcttgttatcattgtgtataactagatatgatgtcaaacttagtccatatatattgatt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctcttgttatcattgtgtataactagatatgatgtcaaacttagtccatatatattgatt 269
Query: 603 tcaagtagaacatgttcagagttaagatggagggatgatgtcatcactatcttaacccat 662
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 268 tcaagtagaacatgttcagagttaagatggagggatgatgtcatcactaccttaacccat 209
Query: 663 taatgaaat 671
|||||||||
Sbjct: 208 taatgaaat 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no209_i19.g1 MSMg01no209_i19.g1 CHROMAT_FILE:
MSMg01no209_i19.g1 PHD_FILE: MSMg01no209_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:43 2005
(281 letters)
>mm_chr1_62107938_62108618
Length = 681
Score = 543 bits (281), Expect = e-159
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 1 tttaaaatacctttaattgttccagtcatttagttacttacttcaaatgtttatatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaatacctttaattgttccagtcatttagttacttacttcaaatgtttatatttga 260
Query: 61 aatccaactattctcctggctctaaaaattcattggccgataatattttgatttctaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccaactattctcctggctctaaaaattcattggccgataatattttgatttctaact 320
Query: 121 gaattgttttcccataattcagcattagtaggcattcttatgtctaaatgtcttcccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattgttttcccataattcagcattagtaggcattcttatgtctaaatgtcttcccctt 380
Query: 181 aaaagttagacctctaatgatgctaatatcagtagtttgtttcttcctgataagttgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagttagacctctaatgatgctaatatcagtagtttgtttcttcctgataagttgtat 440
Query: 241 aagtggaaccaggttttgtacctatggcctttgcacttggg 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtggaaccaggttttgtacctatggcctttgcacttggg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
