BAC Information

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BAC

Clone NameMSMg01-209N16
Chromosome1 (Build37)
Map Location 166,078,497 - 166,187,054
singlet/doubletdoublet
Overlap geneSelp, F5, Slc19a2
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell
Downstream gene4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209N16.T7 (MSMg01no209_n16.b1)MSMg01-209N16.TJ (MSMg01no209_n16.g1)
ACCAG392215AG392216
length738740
length of high quality
(start - end)
315 (46 - 360)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no209_n16.b1 PHD_FILE: MSMg01no209_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:08 2005CHROMAT_FILE: MSMg01no209_n16.g1 PHD_FILE: MSMg01no209_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,078,497 - 166,078,807)(166,186,769 - 166,187,054)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGTAGGGGGCAGTCTGTTGTTTCTGAAGCTACCATGGGCTGG
CTGATGGGAGAACTAGCTTTTATTTCATGGCAGGTCATCTTTGTGTTTTT
GTTTTTCAGCCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATATG
ACCCAACCCCTTAAGGTGAGTTCCCTATGAGGACGGCTTTGAAGAAAATA
GAACAGTAGGTGAAAAGGCAAGAATACCAGTCTTGAATTTTCTTTATATC
ATATGTATGGAATTTTAAGCATGTATTAGAATATTAAGCTCTGATATTGG
CAACAAGTATGTGTTACTGCCCCCCCCACCCAGAATTTATCCTTGGATTT
CCATTCCCGCCCAGATGACAGGTTCTAGAAGTACATATCCTGTTCCAGGA
TGTTTGAGATCCCACTGATGCCAAGGAAGTGACGTTGACAGTGTGGGCTT
GCCTCAAAATCCCCTGTGCTACCTGAGCAGAAACTACCTGAAGAGTAGCA
CTTTTCAAACAGTACAGGGAAAAGTCCCCTTTCCTGCTGGCAGACAGTGC
AGAACCTAGAAAGAGGCAAATGTCTCAGATATCAGAGGGGCTCACGGTGA
AAGACTTCTCTACCTTGTAAGGAAGTAGTCGTTTAATTAGCTTGTTTCTT
TTTCAGAAACCCGGTCTTGCCAATGCCTCATTCGATTT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAACTGAATGGCCAGCAGTC
CCTGGGCATAGAGCAGCATGAACCACGTCACAATCAGGCTGAGTCCCTGC
AGCAGGATGACAGGCTTGTACCGGAGGTAGTCTGTGGCAAGGAACACGGG
AAACAGCAGCAGCAGGTAAGAGTACGTCCACACCGGATAAATTTCATTGT
AGACCTGGTAGGAAGAGTGAAAGCTCGTTAGTGATCAACAGACCCGACAA
GCCATAAGAATGTATTCCTACAATACAGCCCGCCAACACTCCCTTATCCC
CGGAGAAACACTGTTTTTTTTACCCCCCCCCCCCTCCTGGAGTAGCCTTT
CCTATCCCCTCGGCATAATAAAACCCTTTCCCTACACCAAGGATCTTGCT
CTGTGGCCCAGGCTGGACTCAAAAGCACACTGAAGATCAAACTAGTCTGG
GACTGCGGAGCCTCCTGCCTCAGCCTTCCGTGTGCTGCGATTACGGGGAT
TTTCTATCTCACTCATCCCCAGCACCTGAAGGTTTCTGAGAGGCGGACCC
AGCACTCATCTGTATAACTTAACAGGTAGCAGACTGTCTGGAAGACACAA
GGATCATTTCATGCTTTGCAAATTAAATCACTGCCAATTTATCTCTAACA
TTTATTATTATTTCTATTAGATTTCCTACATATGTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_n16.b1 MSMg01no209_n16.b1 CHROMAT_FILE:
MSMg01no209_n16.b1 PHD_FILE: MSMg01no209_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:08 2005
         (315 letters)



>mm_chr1_166078293_166079007
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggtagggggcagtctgttgtttctgaagctaccatgggctggctgatggga 64
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattccagggtagggggcggtctgttgtttcagaagctaccatgggctggctgatggga 264

                                                                       
Query: 65  gaactagcttttatttcatggcaggtcatctttgtgtttttgtttttcagccacctagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaactagcttttatttcatggcaggtcatctttgtgtttttgtttttcagccacctagga 324

                                                                       
Query: 125 acatacggagtcttcactaacgctgcatatgacccaaccccttaaggtgagttccctatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatacggagtcttcactaacgctgcatatgacccaaccccttaaggtgagttccctatg 384

                                                                       
Query: 185 aggacggctttgaagaaaatagaacagtaggtgaaaaggcaagaataccagtcttgaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggacggctttgaagaaaatagaacagtaggtgaaaaggcaagaataccagtcttgaatt 444

                                                                       
Query: 245 ttctttatatcatatgtatggaattttaagcatgtattagaatattaagctctgatattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctttatatcatatgtatggaattttaagcatgtattagaatattaagctctgatattg 504

                      
Query: 305 gcaacaagtat 315
           |||||||||||
Sbjct: 505 gcaacaagtat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_n16.g1 MSMg01no209_n16.g1 CHROMAT_FILE:
MSMg01no209_n16.g1 PHD_FILE: MSMg01no209_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:08 2005
         (288 letters)



>mm_chr1_166186569_166187256
          Length = 688

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaactgaatggccagcagtccctgggcatagagcagcatgaaccacgtcacaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caagaactgaatggccagcagtccctgggcatagagcagcatgaaccacgtcacaatcag 427

                                                                       
Query: 61  gctgagtccctgcagcaggatgacaggcttgtaccggaggtagtctgtggcaaggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctgagtccctgcagcaggatgacaggcttgtaccggaggtagtctgtggcaaggaacac 367

                                                                       
Query: 121 gggaaacagcagcagcaggtaagagtacgtccacaccggataaatttcattgtagacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gggaaacagcagcagcaggtaagagtacgtccacaccggataaatttcattgtagacctg 307

                                                                       
Query: 181 gtaggaagagtgaaagctcgttagtgatcaacagacccgacaagccataagaatgtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtaggaagagtgaaagctcgttagtgatcaacagacccgacaagccataagaatgtattc 247

                                                         
Query: 241 ctacaatacagcccgccaacactcccttatccccggagaaacactg 286
           |||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct: 246 ctacaaaacagcccaccaacactcccttatccccggagaaatactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)