BAC Information

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BAC

Clone NameMSMg01-210C24
Chromosome1 (Build37)
Map Location 166,078,497 - 166,187,054
singlet/doubletdoublet
Overlap geneSelp, F5, Slc19a2
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell
Downstream gene4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210C24.T7 (MSMg01no210_c24.b1)MSMg01-210C24.TJ (MSMg01no210_c24.g1)
ACCAG392404AG392405
length742745
length of high quality
(start - end)		318 (44 - 361)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no210_c24.b1 PHD_FILE: MSMg01no210_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:37 2005CHROMAT_FILE: MSMg01no210_c24.g1 PHD_FILE: MSMg01no210_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,078,497 - 166,078,810)(166,186,764 - 166,187,054)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGGTAGGGGGCAGTCTGTTGTTTCTGAAGCTACCATGGGCTGGCT
GATGGGAGAACTAGCTTTTATTTCATGGCAGGTCATCTTTGTGTTTTTGT
TTTTCAGCCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATATGAC
CCAACCCCTTAAGGTGAGTTCCCTATGAGGACGGCTTTGAAGAAAATAGA
ACAGTAGGTGAAAAGGCAAGAATACCAGTCTTGAATTTTCTTTATATCAT
ATGTATGGAATTTTAAGCATGTATTAGAATATTAAGCTCTGATATTGGCA
ACAAGTATGTGTTACTGAGTGCCCCANACTACACCTTATCCTTGGATTTC
CATTCCCGCCCAGATGAGAGGTTCTAAAAAAACATAACCTGTTCCAGGAT
GTTTGAGATCCCACTGATGCCAAGGAAGTGACGTTGACAGTGTGGGCTTG
CCTCAAAATCCCCTGTGCTACCTGAGCAGAAACTACCTGAAGAGTAGCAC
TTTTCAAACAGTACAGGGAAAAGTCCCCTTTCCTGCTGGTAGACAGTGCA
GAACCTAGAAAGAGGCAAATGTCTCAGACATCAGAGGGGCCCACGGTGAA
AGACTTCTTTATCTTGTAAGGAAGCAGTCGTTTAATTAGTTTGTTTCTTT
TTCAGAAACCCGGTCTGCCAATGTCTCATTCGATTTCTCAGG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAACTGAATGGCCAGCAGTCC
CTGGGCATAGAGCAGCATGAACCACGTCACAATCAGGCTGAGTCCCTGCA
GCAGGATGACAGGCTTGTACCGGAGGTAGTCTGTGGCAAGGAACACGGGA
AACAGCAGCAGCAGGTAAGAGTACGTCCACACCGGATAAATTTCATTGTA
GACCTGGTAGGAAGAGTGAAAGCTCGTTAGTGATCAACAGACCCGACAAG
CCATAAGAATGTATTCCTACAAAACAGCCCGCCAACACTCCCTTATCCCC
GGAGAAACACTGGCCACATTATTGTTCCGCCCACCTCCTGGAGTAGCCTT
TCCTATCCCCTCGGCATAATAAAACCCTTTCCCTACACCAAGGATCTTGC
TCTGTGGCCCAGGCTGGACTCAAAAGCACACTGAAGATCAAACTAGTCTG
GGACTGCGGAGCCTCCTGCCTCAGCCTTCCGTGTGCTGCGATTACGGGGA
TTTTCTATCTCACTCATCCCCAGCACCTGAAGGTTTCTGAGAGGCGGACC
CAGCACTCATCTGTATAACTTAACAGGCAGCAGACTGTCTGGAAGACACA
AGGACCAACACATGTTTTGGAAATTAAATCACTGTCAATTTATCTCTAAA
ATTTATTATTATTTCTATTAGATTTCATACATATGTACAAAGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_c24.b1 MSMg01no210_c24.b1 CHROMAT_FILE:
MSMg01no210_c24.b1 PHD_FILE: MSMg01no210_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:37 2005
         (318 letters)



>mm_chr1_166078293_166079010
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggtagggggcagtctgttgtttctgaagctaccatgggctggctgatggga 64
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattccagggtagggggcggtctgttgtttcagaagctaccatgggctggctgatggga 264

                                                                       
Query: 65  gaactagcttttatttcatggcaggtcatctttgtgtttttgtttttcagccacctagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaactagcttttatttcatggcaggtcatctttgtgtttttgtttttcagccacctagga 324

                                                                       
Query: 125 acatacggagtcttcactaacgctgcatatgacccaaccccttaaggtgagttccctatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatacggagtcttcactaacgctgcatatgacccaaccccttaaggtgagttccctatg 384

                                                                       
Query: 185 aggacggctttgaagaaaatagaacagtaggtgaaaaggcaagaataccagtcttgaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggacggctttgaagaaaatagaacagtaggtgaaaaggcaagaataccagtcttgaatt 444

                                                                       
Query: 245 ttctttatatcatatgtatggaattttaagcatgtattagaatattaagctctgatattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctttatatcatatgtatggaattttaagcatgtattagaatattaagctctgatattg 504

                         
Query: 305 gcaacaagtatgtg 318
           ||||||||||||||
Sbjct: 505 gcaacaagtatgtg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no210_c24.g1 MSMg01no210_c24.g1 CHROMAT_FILE:
MSMg01no210_c24.g1 PHD_FILE: MSMg01no210_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:37 2005
         (291 letters)



>mm_chr1_166186564_166187254
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaactgaatggccagcagtccctgggcatagagcagcatgaaccacgtcacaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caagaactgaatggccagcagtccctgggcatagagcagcatgaaccacgtcacaatcag 432

                                                                       
Query: 61  gctgagtccctgcagcaggatgacaggcttgtaccggaggtagtctgtggcaaggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gctgagtccctgcagcaggatgacaggcttgtaccggaggtagtctgtggcaaggaacac 372

                                                                       
Query: 121 gggaaacagcagcagcaggtaagagtacgtccacaccggataaatttcattgtagacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gggaaacagcagcagcaggtaagagtacgtccacaccggataaatttcattgtagacctg 312

                                                                       
Query: 181 gtaggaagagtgaaagctcgttagtgatcaacagacccgacaagccataagaatgtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtaggaagagtgaaagctcgttagtgatcaacagacccgacaagccataagaatgtattc 252

                                                              
Query: 241 ctacaaaacagcccgccaacactcccttatccccggagaaacactggccac 291
           |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 251 ctacaaaacagcccaccaacactcccttatccccggagaaatactggccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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