BAC Information

Click to search

BAC

Clone NameMSMg01-210K10
Chromosome1 (Build37)
Map Location 125,294,815 - 125,295,130
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210K10.T7 (MSMg01no210_k10.b1)MSMg01-210K10.TJ (MSMg01no210_k10.g1)
ACCAG392685AG392686
length764847
length of high quality
(start - end)
321 (45 - 365)80 (77 - 156)
definitionCHROMAT_FILE: MSMg01no210_k10.b1 PHD_FILE: MSMg01no210_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:16 2005CHROMAT_FILE: MSMg01no210_k10.g1 PHD_FILE: MSMg01no210_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCACATAGCTATGTTTCTGGTCCAGGTAGGTTCTGGGATTTTTC
TTTGGTTCAGTTTTACTGTCACTGAAGGCTCAATGCTCTTTCCTGGGACC
TGTATTTGTGTGCATGTACAGGCATACATGAGCAATGACTTGCCTGTGGA
GGTCAGAGGACAACCTCTAGGGTTGCTTGTTCAATTCTGCCTATGCTATG
CCAGCTGATCCAGGTACTCCCAGAGATTCTCCTGCCTCTGTATCTCATCT
CACCAGAGCAGTGCTGGGATTATGTATGCATGACACCCATTCTGCCTTTT
GCATGGGCTCTGTATTTTCAAACTGACCTCCCCATGCTTATGTGACAAGG
GCTTCATCAACCAAACCCCCCTTCCCAGTCCCAAATATCCTAGTTCTTGT
GGCTAGAAGAGCCTAGAGTGAGTGCCATGACGTGAAAGGCTCACACGTAG
TTTTGGGAGATGATGTCTTATATTCTTACTGCTACATTACAATATCAATA
ATAGGTTGCCAGCCATATGTCCTGTGAATTTGAGGCCTTGGCATGCTATG
CTTACATGCAAGTACGTTTTTCATTTATTATCCACTTTCACCTTCCCTTC
TACTTTCTTTCCTATCCTTTTTTTTTTTTTCCTCCTCCTTCCCCTTCATC
TCTTCTTGCCAAACTCTATCTTTTAATTTATTACAACCATACTATAATAC
TTCTTTAATTTTTT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGATCTCACTTGGTAAGGGAAA
TAGACACTGGAGGAAGATGGAGGGAGGAAACTGTTGTGGGAGAGGGTGTG
AGGACNCCCCNCNNCCCCCCCCTCCGCCCCTCCCCCCTCTCTTCCCCCCT
CCCTCTCCCTACCTGTTCTCCTCCTCCCCCTCTATTCTTCTATCCCTCTT
ATTCTTTCTTTTCTTCCTATTATTCCATACCACCCCTTTATTATTAACAT
CATCACGCCCCTTCCTATTCGACCCCTTTCTTTTTTCTTCCCTCATCTCC
CAAAAAAAGAGAAAATTTTTTTTTTTTTTCCCCCAANACGAGCCCCCCAT
TAATATTTTTATTTTTTTTATTTTTGGGGCCCCCCCCCCTTTTTAAAAAA
AAAACTCTCTCCTTCGGTCGCCTCCCCCTCCCTCCCTCCCAACATCTCCT
CCACCCCCCCTCCTCACTTACCCCCACTCCCCTCTCTCCTTCCTACTTTC
CCCCCCCATCCATTTTTCTTCTTTCCTCCATTCCTCTTTCTTTCTCATCC
CACCTTTCCCCCCCTCCTTCCTTCACCCCCCTCCCCACTCTCCCCCTCCT
CTCCCCTCTTTCCTCCCTCTCTCCCACTTACTCTTCTCTTTTCTTCGTTC
AAATTTTCTATCCTCTCCCCTCCTCCCCTTTCTCACCCCCTTATACTTCT
TACTTTCCTTTTTTCCTCTTCTCCCCTCCTCTTCCCACACTCTATCTTCT
CCCCTTCCCCCCTTTTCGACTTCCTCCTTTTTCTTTACTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_k10.b1 MSMg01no210_k10.b1 CHROMAT_FILE:
MSMg01no210_k10.b1 PHD_FILE: MSMg01no210_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:16 2005
         (321 letters)



>mm_chr1_125294443_125295163
          Length = 721

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcacatagctatgtttctggtccaggtaggttctgggatttttctttggttc 64
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattccaccacatagctatgttcctggtccaggtaggttctgggatttttctttggttc 629

                                                                       
Query: 65  agttttactgtcactgaaggctcaatgctctttcctgggacctgtatttgtgtgcatgta 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agttttattgtcactgaaggctcaatgctctttcctgggacctgtatttgtgtgcatgta 569

                                                                       
Query: 125 caggcatacatgagcaatgacttgcctgtggaggtcagaggacaacctctagggttgctt 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 568 caggcatacatgagcaatgacttggctgtggaggtcagaggacaacctctagggttgctt 509

                                                                       
Query: 185 gttcaattctgcctatgctatgccagctgatccaggtactcccagagattctcctgcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gttcaattctgcctatgctatgccagctgatccaggtactcccagagattctcctgcctc 449

                                                                       
Query: 245 tgtatctcatctcaccagagcagtgctgggattatgtatgcatgacacccattctgcctt 304
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 448 tgtatctcatctcaccagagcagtgctgggattatggatgcatgacaccaattctgcctt 389

                           
Query: 305 ttgcatgggctctgta 320
           ||||||||||||||||
Sbjct: 388 ttgcatgggctctgta 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)