Query= MSMg01no210_m14.b1 MSMg01no210_m14.b1 CHROMAT_FILE:
MSMg01no210_m14.b1 PHD_FILE: MSMg01no210_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:28 2005
(448 letters)
>mm_chr1_65244177_65245024
Length = 848
Score = 772 bits (399), Expect = 0.0
Identities = 422/430 (98%), Gaps = 1/430 (0%)
Strand = Plus / Plus
Query: 17 gaattcacttttcttgctcgagttaaccttttgtgtgctcgtttgatcacacagggtgtg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcacttttcttgctcgagttaaccttttgtgtgctcgtttgatcacacagggtgtg 276
Query: 77 tcctactgattgttctcggccttcataggcagctctctttctctactctgttcttattca 136
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 277 tcctactgattgttgtcggccttcataggcagctctcttcctctactctgttcttattca 336
Query: 137 cctccctgcagtttgagactcttggcatcttagcaggcaccaaggtaacaggaagttaag 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctccctgcagtttgagactcttggcatcttagcaggcaccaaggtaacaggaagttaag 396
Query: 197 ctcacccttttttgtactttgtgttctacatttaggagcaatgagccaatctcatacttg 256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctcacctttttttgtactttgtgttctacatttaggagcaatgagccaatctcatacttg 456
Query: 257 ttagtttgacaggtttgtcaagtattaacctaagcactgtcagtattcaattaagaatat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttagtttgacaggtttgtcaagtattaacctaagcactgtcagtattcaattaagaatat 516
Query: 317 ccagaattattgcctttttttttctgctgccttaccacttctctcagtcttcttgttact 376
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 517 ccagaattattgcctttttttt-ctgttgccttaccacttctctcagtcttcttgttact 575
Query: 377 attanaaacactaatggatttatttttttaaattttcttttaagagttattttgtgtttt 436
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 attagaaatactaatggttttatttttttaaattttcttttaagagttattttgtgtttt 635
Query: 437 attatttgtg 446
||||||||||
Sbjct: 636 attatttgtg 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no210_m14.g1 MSMg01no210_m14.g1 CHROMAT_FILE:
MSMg01no210_m14.g1 PHD_FILE: MSMg01no210_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:28 2005
(291 letters)
>mm_chr1_65333506_65334196
Length = 691
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Minus
Query: 1 cttgaatctctttgtgtaaaatttaagggttattttgataactaaaaacacaaatgtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cttgaatctctttgtgtaaaatttaagggttattttgataactaaaaacacaaatgtatt 361
Query: 61 caattcactgacttatccctttgacaatattctttctaatgagcagaaataaattgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caattcactgacttatccctttgacaatattctttctaatgagcagaaataaattgtgtt 301
Query: 121 ttaataactgcatttattatctacaaaagaacaaaggatgaattatccacttagtctaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttaataactgcatttattatctacaaaagaacaaaggatgaattatccacttagtctaga 241
Query: 181 agtctttactaagctgtaaagctttgccctgcctcacccagactgagaagataacttagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtctttactaagctgtaaagctttgccctgcctcacccagactgagaagataacttagt 181
Query: 241 tgagaaagcacttgctgtgcaagcaagagaacctgagttccatgtccagaa 291
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 180 tgagaaagcacttgctgtgcaagcaaaagaacctgagttccatgtccagaa 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
