BAC Information

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BAC

Clone NameMSMg01-211A22
Chromosome1 (Build37)
Map Location 185,702,594 - 185,702,968
singlet/doubletsinglet
Overlap genenone
Upstream geneSusd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211A22.T7 (MSMg01no211_a22.b1)MSMg01-211A22.TJ (MSMg01no211_a22.g1)
ACCAG392940AG392941
length1,1831,213
length of high quality
(start - end)
415 (30 - 444)377 (72 - 448)
definitionCHROMAT_FILE: MSMg01no211_a22.b1 PHD_FILE: MSMg01no211_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:53 2005CHROMAT_FILE: MSMg01no211_a22.g1 PHD_FILE: MSMg01no211_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGGCTATGGGCCTATCGACTCCTAAGGGAGAGGATCCGCGGAATTC
TCTGTTTAGCTCTGTACCCATCTTTTGAGTAGGTTATTTGTTTTGTTGAT
ATCTAATGTCTTGAACTCTTTATATATTTTGGAGATTAGTCCTATGTTGG
ATATAGGGTTAGTGATGATCTTTTCCTATTCTGTAGGCTTCTGTTTTGTC
CTATTGATGGTGTCCTTAGCCTTGCAGAAGATTTTTTGTTTCATGAGGTT
CGATGAGTTCAGTGAGTTCAAGGCAGTTCCCCACTTCCTCTTCTATGGGA
TTTAGTGTGTCTGGTTTTATATTGAGATCTTTGATCCACTTGGATTTGAG
TTTTGTGTAGGGTGAAAGCTATGGGTCTATTTACATTCTTCTACTTGAAG
ACATCCAGCTAGACCAGCACTGTTTTGTTGAAGATGGTTTTTCTTTTATT
GTCCGCCCCCGGCTTCTTTGTCAAATATCATGACAATAGGGGTGTGAGAT
TATTTCTAGGTCTTTGATTTCATTCCATTAATTTATCTGTCTGTTTTTAT
GCCAATACCATGCAGTTTTATTACTATTGCTCTATAGTATAGCTTGCACT
CAGGGATAGTGAATCCTCCTGAAGATTATTTTAGCTATCCTGGTGTCTTA
GTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTAT
AAAAAACAACATTTAATTGGGGCTGGCTTACAGGTTCAAAGGTTCAGTCC
ATTATCATCAAGGTGGGAGCATGGCAGTATCCAGGCAGGCATGACACAGG
AGGAGCTGAGAGTTCTATGTCTTCATCCAAAGGCTGCTAGTAGAAGACTG
ACTTCCAGGCAACTAGGGTGAGGATCTTATACCCCCACCCCCCGTGACAC
ACCCATTCCAACCAGGTCACACTATTTCCACAGGGCCACCCCTTCAGATG
GGGCCCTCCCTGGCCCAGGGATTACAAACCATCCCAATCCACTCCCTGGC
CCCCCTAGACTTGTTAAAAAACTTGAGTCTTTGGGTGTCCTTACCTTAAC
CTAGCATTATTGCCAAATGGCCTTTAATCCCACTTTTTCAGGCCCTCATA
ATCCTAATCCAATCTCCAATAGGTTTTAAATTCCAAAGTTCCAAGGCTCC
TTTTGAAAAACCCTCCCCCTTGGATTAAAGGGA
NNCCACGTGTGGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTTAAACTTGGCTCCTGGGATTCTGT
CTCTGCTTTTTCCAGAGAAGTGAGAGTAACATGCAGGAATGAAGCGAGGA
TCCAAGTTTATAAGAATCACAGTAAAATCATCTATGCCACTAAGGAACCT
ACTGTGTGTGAAACAAGTAGGCAGAGGGAAGGAATCTATGCCTGGATGTT
TAAGTAAACACACAAAGAGAGGACATGCATGCTCACATACGTGTGTACAT
ACACACACATGTTCACCACCTACAGTGATATCTCACACAAAGCCTCATCA
CATACCCCACCACATCATATACAAACCTAACCTACACAGTGACTTTGTAT
TTGCACAAAGAACACATCTAGTCACACACACAGCCTTGACACACACAAAT
TTTTTTTCTACCCCCCCCCCACAGTAATGTCTCTCCCAAAAAAAAGAGGG
GGGGNNTTGCNCATANTCATGTCCCGCACAGAGAATATGCCTAATCACTG
TCACATCATACTAACATTAACTCTTGTCTCTGCCCGCACCATGTCCAGCT
GTGCAGGAAGCATCTGTCCACATGGAGCCTCCAATCCCTGGAACCCCTTT
ATCTGTGCTCTCACCCACTTTTTTTAAAAATTGAGACAGGGTTTCTCTGT
ATAGCTTTGGCTGTCCTGGAACTCGCTTTGTAGACCAGGCTGGCTCTCAT
CCACTTTTACCACCAACATCAGGCCAGGAGCCTGCGGCCAGATGGAAACA
GAGTTGCACTCCTTGCTTTCGGGCTCGGTTTCTCCATTGGGATATTAAAG
TCGGACCCAAAAAGAAGGGTATGATGCTACCGGTTTAATGTCACACTCCT
TTTTATAGGAATAAAAGGGAATTGCCCCTTGACCTTTTTTACTACTCCCT
ACCCGGTCAGCAACCCCCCCTTGGAATTGTTTTACCTTAGGGCATTTTAT
CAGGGCAAATTTTAATTGGTTTTCCCCTAAACTCCCATTTTTTAACCTAA
TCTTAATCGCAAACATTATTCCCTTAATTCCTCACCGCCCCCTTTTTTTA
TCTGTCATAATCCCCCGCCTTAACTACCCCTCTTGCCCTCTTTCCTTTCC
CCTCGTTACTAACACTTTCTCTCCCTTTTCTTACATGTGTTCTTCTCCAA
TATATCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_a22.g1 MSMg01no211_a22.g1 CHROMAT_FILE:
MSMg01no211_a22.g1 PHD_FILE: MSMg01no211_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:54 2005
         (377 letters)



>mm_chr1_185702394_185703170
          Length = 777

 Score =  687 bits (355), Expect = 0.0
 Identities = 370/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagttaaacttggctcctgggattctgtctctgctttttccagagaagtgagagtaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcagttaaacttggctcctgggattctgtctctgctttttccagagaagtgagagtaaca 516

                                                                       
Query: 61  tgcaggaatgaagcgaggatccaagtttataagaatcacagtaaaatcatctatgccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgcaggaatgaagcgaggatccaagtttataagaatcacagtaaaatcatctatgccact 456

                                                                       
Query: 121 aaggaacctactgtgtgtgaaacaagtaggcagagggaaggaatctatgcctggatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaggaacctactgtgtgtgaaacaagtaggcagagggaaggaatctatgcctggatgttt 396

                                                                       
Query: 181 aagtaaacacacaaagagaggacatgcatgctcacatacgtgtgtacatacacacacatg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 395 aagtaaacacacaaagagaggacatgcatgctcacatacatgtgtacatacacacacatg 336

                                                                       
Query: 241 ttcaccacctacagtgatatctcacacaaagcctcatcacataccccaccacatcatata 300
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 335 ttcaccacctacagtgatgtctcacacaaagcctcatcacataccccaccacatcataca 276

                                                                       
Query: 301 caaacctaacctacacagtgactttgtatttgcacaaagaacacatctagtcacacacac 360
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 275 caaacctaacctacacagtgactttgtatatgcacaaagaacacatctagtcacacgcac 216

                          
Query: 361 agccttgacacacac 375
           |||||||||||||||
Sbjct: 215 agccttgacacacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)