BAC Information

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BAC

Clone NameMSMg01-211G08
Chromosome1 (Build37)
Map Location 29,961,524 - 29,991,675
singlet/doubletdoublet
Overlap geneLOC665944
Upstream geneEG623924, EG433283, LOC100040665
Downstream geneEG624138, LOC100040699, Phf3, EG638995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211G08.T7 (MSMg01no211_g08.b1)MSMg01-211G08.TJ (MSMg01no211_g08.g1)
ACCAG393135AG393136
length1,2461,297
length of high quality
(start - end)
421 (28 - 448)317 (69 - 385)
definitionCHROMAT_FILE: MSMg01no211_g08.b1 PHD_FILE: MSMg01no211_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:30 2005CHROMAT_FILE: MSMg01no211_g08.g1 PHD_FILE: MSMg01no211_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,991,277 - 29,991,675)(29,961,524 - 29,961,837)
sequence
NNCCTTCACTGGTCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATGTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACCTTCCTGAGTTCTTTATATATATTGGATATTAGTCCCCTATC
TGAGTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGGGGTAGGACCTGTACATATAAAGGCGATGCTTCCAG
ATGGAGAGCCTACCTATATTCCCATTAAAAGTGGCCAGGTATCAATGGGA
ATTATAAGAGTTAAAATGGAGGGCAGTTACTGTGCCCAGTTGCACCAGCT
GAGATTTTGATTCCAGTATAAATAGCAAGGCTCAGTTCAGTGAGGACTGA
AAGTAATGAGCTAAAGCAGTATCCTCACAAATAAGTTCACAAACGGGATT
TTTTTACACCCGCCCATTGAAGGAAACCTACGAACACTGAAATAGTGGAG
ATTTAGTGGGGACGCCAAGTCATGATGCTCTTCATAGGAAAACATCTATT
AAAATTTTCTTCAGTGCTGTTCCATTTAGCCACATATTCTGTGGTCCTAT
CGGAAACTGCCTTCTTCGTTGTTCCTATGGTCTTCTATTTTCTTGCTATT
TACTCACATATGCACTCAGTTTCACTTTTCTACGTGAGAGCAGACTTCAT
CTCTTTATGGGCATCTGCAGGGTCCCTCTACACTAGATCTTATGATTATT
TTGAATCTGATGTTCTCCTGTTTGTTTTTTATATCCTCTCTTGTATAGAG
TAAACTTCTTTCCTACTTTGTTAGCTTTATTTTATTAAGTAATAACTCCA
CCTGAATCAAGTTAAAACTTAAAAACTTAAGGAAGAATTCCCATTTTTCT
TTTCCCTTCGAGCAGCCCTTGAGTCATTTATGGTTAATGTGTCATTATTC
CATTAAAAGAAATACAGTTCAAGAATGCTTCCCCTTCTAACTCTTTGATT
AAGTTTCTAAATCTGGGTTCAAATCTTTGTCCCTTGATTGAACTATGGCA
AAGCAGTTTTCTGCTCGCATTTGGCCTCCCAATTTTCTCCACTAAAAAAA
ATCCTGCGAATCTCCTTATACCCTATTCCTTCCCTTCTCTTCTTGTTCCC
CCCCTGGGCCCCCCGGTTAAAATCTGGTCTTTATCCTGAACTTTCTACCA
CCTCCTCACCCCCCTAATTCTGTTGTTTTTCTCCACATTATATCCC
NNNCCATGTGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGTAAGTATCCATCTCAGAGCTTGAGAAAT
GAGCAGAACTTCCTTTTATTGAAATCTTTTCAGGGATGTTTACTCTGTAA
CTCAGAACATAAAGTGCCTAGCATTTAGCACTAGAGAAGGAGTCTATGAG
TGTGTTTTTGGGAAGGAGAAGGTATATGAATGGGTGAGTGTGAATACCGA
TACACAAATTAAACAGCTGCTGTGTGAAGGCCAAAGAAGACAGTGCTGGA
GAGGTTGTTCTGTCCTTCCACACTGTGATGCCCAGGGATCAGGCTTCAAA
CTTGAGGATTGGTGGGAGGTGCCTTACCTGCTGGAGTATTCTCTTTTTTC
CCAAGGACACAATTCAGACTTCAAGGTACTCTTATCAGATTTCTGTTTTT
TTTTCCCCCCCCCCCNTNAAGTTANTTTTCCTTAAAAAAAAGGGGGGGGT
TGNTTGTTTNTTGCCCCCCANTATGTTCTTGCACTTGGCTTTGCCCTTTT
ACGACGTAAAGTATCAGTTTCTAGCATAACTATTCTTCTTATGGTGCACC
ATACTTTCTGGGTCTCTCTTTATGATTCTTTACAGACCCTGACTATTATC
GTATGTCTGTCCCATCTTCTTCCTTCCATGTTTCCTATTATTCTCCTTCC
ATCTTATGGCCCCCTTAATTGTTCCTTACCTTCTACCACTTATTATCTCT
CATTCGATCCTCTCCTTGTTTTTCTCCTCTCTTCTCTCTCTCTCCCTTCC
TATTTTCCAAACCCTCTTCCCCCCCTTTCCTACCCTCCTAATCCTTCTTG
ATCTCTCTTCTTTCCCTTTATTTTCTCCCCCTCCTTCATTCCTTTTTTCT
TCTTCCTCTTACTCTTTCCTCTTCTCTCTTTTCCTTCTCTTTCTTCTTTT
TCCTCTTCTTGTTCCTTTCTCTCTTCTCTTTTTCCCTTCATCTCTTTTTT
TCTTTTCTCTCTTTCTTTGACTCTTCATTCCTCTTTTCTCTCTTCTCTCT
TATTATCTTTCCTATTCTACTCTTATCTCTCCTACTTTTTCATCCCTCTA
TACCTTTTCTTCTTCTTCCCTCTTTCTTTTTTCTCTTACTTTCTCTTCTC
TCCTCTCTCTCTCTTTCCTTTTTACCATTTCCCTCTCTTTATTCTTATCT
CTTCTCTCTTACTTCTCTTCTCATCTTTCTCCTCCTCTTGTTCAATTTCC
TCTTTCTCTTCTCTTTTATTCTTCTTCTTTTTCTCCTTGCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_g08.b1 MSMg01no211_g08.b1 CHROMAT_FILE:
MSMg01no211_g08.b1 PHD_FILE: MSMg01no211_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:30 2005
         (421 letters)



>mm_chr1_29990886_29991706
          Length = 821

 Score =  687 bits (355), Expect = 0.0
 Identities = 388/399 (97%)
 Strand = Plus / Minus

                                                                       
Query: 19  gaattctttgttcagttctgagccccatgttttaatggggttatttgattttctggagtc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 790 gaattctttgttcagttctgagccccatgttttaatggggttatttgattttccggagtc 731

                                                                       
Query: 79  caccttcctgagttctttatatatattggatattagtcccctatctgagttaggataggt 138
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 730 caccttcctgagttctttatatatattggatattagtcccctatctgatttaggataggt 671

                                                                       
Query: 139 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtggggtaggacct 198
           |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct: 670 aaagatcctttcccaatctgttggtgctctttttgtcttattgatggtgggggaggacct 611

                                                                       
Query: 199 gtacatataaaggcgatgcttccagatggagagcctacctatattcccattaaaagtggc 258
           |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 610 gtacatataaaggcgatgtttccagaaggagagcctacctatagtcccattaaaagtggc 551

                                                                       
Query: 259 caggtatcaatgggaattataagagttaaaatggagggcagttactgtgcccagttgcac 318
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caggtatcaatggggattataagagttaaaatggagggcagttactgtgcccagttgcac 491

                                                                       
Query: 319 cagctgagattttgattccagtataaatagcaaggctcagttcagtgaggactgaaagta 378
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 490 cagctgagattttgattccagtataaatagcaaggctcagttcagtgaggacagaaagta 431

                                                  
Query: 379 atgagctaaagcagtatcctcacaaataagttcacaaac 417
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 430 atgagctaaagcagtatcctcacaaataagtttacaaac 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no211_g08.g1 MSMg01no211_g08.g1 CHROMAT_FILE:
MSMg01no211_g08.g1 PHD_FILE: MSMg01no211_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:30 2005
         (317 letters)



>mm_chr1_29961321_29962037
          Length = 717

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gtaagtatccatctcagagcttgagaaatgagcagaacttccttttattgaaatcttttc 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 204 gtaagtatccatctcagagcttgagaaatgagcagaccttccttttattgaaatcttttc 263

                                                                       
Query: 64  agggatgtttactctgtaactcagaacataaagtgcctagcatttagcactagagaagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggatgtttactctgtaactcagaacataaagtgcctagcatttagcactagagaagga 323

                                                                       
Query: 124 gtctatgagtgtgtttttgggaaggagaaggtatatgaatgggtgagtgtgaataccgat 183
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 gtctatgagtgtgtgtttgggaaggagaaggtatatgaatgggtgagtgtgaatacagat 383

                                                                       
Query: 184 acacaaattaaacagctgctgtgtgaaggccaaagaagacagtgctggagaggttgttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacaaattaaacagctgctgtgtgaaggccaaagaagacagtgctggagaggttgttct 443

                                                                       
Query: 244 gtccttccacactgtgatgcccagggatcaggcttcaaacttgaggattggtgggaggtg 303
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 444 gtccttccacactgtgatgcccagggatcagccttcaaaattgaggattggtgggaggtg 503

                         
Query: 304 ccttacctgctgga 317
           ||||||||| ||||
Sbjct: 504 ccttacctgttgga 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)