BAC Information

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BAC

Clone NameMSMg01-211I06
Chromosome1 (Build37)
Map Location 13,551,305 - 13,551,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685
Downstream geneTram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211I06.T7 (MSMg01no211_i06.b1)MSMg01-211I06.TJ (MSMg01no211_i06.g1)
ACCAG393205AG393206
length1,2321,344
length of high quality
(start - end)
421 (30 - 450)231 (71 - 301)
definitionCHROMAT_FILE: MSMg01no211_i06.b1 PHD_FILE: MSMg01no211_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:43 2005CHROMAT_FILE: MSMg01no211_i06.g1 PHD_FILE: MSMg01no211_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCCTATGGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTC
TCCGCTTGCAGCCTGTGGTGTTTTAGATTGATTCCTTCGGCTGTTTCTTA
TGCAGGATCTGTGCTTCATCTGAAATCCTGCTTGCTTCACACTTGAGGCC
AGCTAGAAGTCCAGCATTCTGCCCAATGTCTGCACACTAGTGACAGACAC
TGTGGCCAGCGTGGGGACCAGGGTGGAGCAGACCTTGCATTTCAGAGCAA
TGGAGACGAGTTTCTCCTTGATGTTTCCAGTTGTGTAGAAAACAAGTTCG
CGTTTGCATTTGCAATTATTTTTATATTTTTAGGAAAGGCTCTTGATATA
CGATCCATGCTAGCTTCTAACACTGCAATACATTTGCCTCAGCAACCCTA
GGGCTCAGATGACAGACACCTGGATAGGACATTTTATATTAAGTCTCTTT
TTTTTACCCCCCACCTGTAATGGGTTCGAACCTGCAAAAAAAAAGGCCCC
CCGTTCCCTTGTGGCTCAGCAAGTGTCAGTTCTTATCCAGACAGGCTGCC
TCCAATTTTTCCTGGCATTGGTAAGGGAAGCCAGCCTCCATTCTGAGAAT
TCCTAAAATACCCTTCACAGTGCAAACTGTCATACACTGGGCGTCCTATA
AGCAAAAGAAATTACTTCTGTCACCTTGGAGGTGGGGAAATCCAGGATCA
AGGCACTGGCAGATCTGGTGTTAACCTGGTGAAAGGAGCAAGCAGCTTCC
TTAGGCCTCTTCACAGAGACTAATCCATTCACAGAATCCATGGGACTAAG
TTATCTGTAAATCCTCCACCTCATAACACCATCATGAGGTGGGGATGGGG
GGCCCGNGGTTTTGTCTCCTCTCGTTCTTTTTCTTTTCTCTTACTCTCCT
CCTTCCCCTCCCCGTACCTCCGCTTATTCTTCTCTCATCTTCCCCCCCTT
TCACCCTTCCCTATCTTTTTACTACCTACAATATTAATCTCTTATCTTAT
TTCTCTAATTTCTTCCCTTCTCCTCTCTATTCCACTTCTCTTCCTTCCTA
ACTACCTCTTTTCTTCTCTTCCTTTCCTTTTTTTCCCTTCTTCTCCCTCT
TTTCTCCCCTTACTTCTTTTCCCTTTCTTCTCATCCTCTCTTCTCTCCAT
TATTCATCTCATTCCTACTATTCTCCCGCTTACATCCATACTCTACCTTT
TCCTCTTCTCCCTTCTCCTATTCTCTTCCTCT
NNNGGCTGATAGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCGTTGAAGTCTCAACCTGAATTGTGAC
TAGGCTTGAGGATAAATAGGGCTTTTGTGGAGGTAACTAAAGCTAAATGA
GGTCATAAGGATGGAGCCTATGTCAGTGAGATTACTGCCTTTGTAAAAAG
AGGAAGAAGCAGCTAAGAGTCTCTCTTCTTGTGAGAGATAGAAAAGAAGA
GTTTGAGCAGGGTGTGGTGGCACATGCTTTTTATCCTGGGCCACAGGAGG
CNNANNNNNATGNATTGCTGAGTTAATGGCCTCCCTGGTCTACCGAGTGA
ATTCTCGGTACTCCCGGTTTACTACAGAGAAACCCTGCCTCTCTATTTTT
TTTTTTTATATAAGGCTATCACGATTCTTTTATTGGGGGGAATAGATATT
TTTTTTTTTTTTCCCCCCCCCCGAAGANAGANCCCCCCCCCCCCAAAAAA
GGGGGGGGGTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTCCT
CTTCCCTCTTTCCTTCCTCTCCTTCCTCCTTCCCCTTCTTTCTCTCTTCC
CCCTCTTCTTTCCCTCTTTCTTTCTCCTCTCTCTCCTTCCCTTCCTTTTT
CCCTCTTTCCTCTTCTTTTCTTCTCTCTCCTCCTCCCTCTTTCTCTTTCC
TCTTCTCCTCTCTCTCTCCTTCTCTTCTTCTTCCTCCCTCTCTCTCTCCT
TTCTTCCTCTTTCTTCTTCTTCTTCTTCTTTTCCTCCTCTTCCCTCCCTT
TCTCTCCCTCCTCCTCTCCCTCCTTTTCTTCTTCCTCCTCCTCTTCTCTC
TCCTCTCCTCTCTTCCTCCTCTCCTCTTTTCCCTCTTCTTCTCTTTCTCC
TCCTTTCTCCTCCCTCTTTTCTTTTTTCTTCTCCCCCTTCTTCTTCTCTT
CCTTCTTCTTTCCCCCCTTCTCTTCTTCCCTCTTCCCTTCCTCCTTTTCC
CCCTCCTTCTCCTTCCTCTTTCCCTCCTCCTCTTTTCCTTTCTTTTTCTT
TCCTCCTCCTTCCTTTCCCCCTTTTCCCCCCCCCTTCTCCTTTCTCCTCT
TCCTTCTCTTCTCTCCCCTCCTTTTCTCCTCTCTTTCCTTTCTTTTTTTC
TCTTTCTCCCCTCCCTCTCTCTCCCTCTCTTCCTCCTTTCTTCCTTTTCT
TCTTCTCTCCTTTCTCTTTCTCCTTCTCTTTCTCTCCTTTCTCCTCTTTT
CTCTCTTCTCTTCTCTTCCCCTCTCTTCCTCTTCCTCTTTTNCTTCTTCT
CCTTCCTCTTTTCCCTTTCTTCTCTCCCTCCTTTCCCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_i06.b1 MSMg01no211_i06.b1 CHROMAT_FILE:
MSMg01no211_i06.b1 PHD_FILE: MSMg01no211_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:43 2005
         (421 letters)



>mm_chr1_13551218_13552038
          Length = 821

 Score =  725 bits (375), Expect = 0.0
 Identities = 396/403 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctccgcttgcagcctgtggtgttttagattgattccttcggctgtttcttatgca 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattctccgcttgcagcctgtggtgttttagattgattccttcggctgtttcttatgca 431

                                                                       
Query: 76  ggatctgtgcttcatctgaaatcctgcttgcttcacacttgaggccagctagaagtccag 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggatctgtgcttcatctgaaatcctgcttgcttcacacttgaggccagctagaagtccag 371

                                                                       
Query: 136 cattctgcccaatgtctgcacactagtgacagacactgtggccagcgtggggaccagggt 195
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 cattctgcccaatgtctgcacactagtgacagacactgtggccagcgtgggggccagggt 311

                                                                       
Query: 196 ggagcagaccttgcatttcagagcaatggagacgagtttctccttgatgtttccagttgt 255
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 310 ggagcagaccttgcatttcagagcaatggagacgagtttctccttaatgtttccagttgt 251

                                                                       
Query: 256 gtagaaaacaagttcgcgtttgcatttgcaattatttttatatttttaggaaaggctctt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtagaaaacaagttcgcgtttgcatttgcaattatttttatatttttaggaaaggctctt 191

                                                                       
Query: 316 gatatacgatccatgctagcttctaacactgcaatacatttgcctcagcaaccctagggc 375
           | |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 190 gctatatgatccatgctagcttctaacactacaatacatttgcctcagcaacccaagggc 131

                                                      
Query: 376 tcagatgacagacacctggataggacattttatattaagtctc 418
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 130 tcagatgacagatacctggataggacattttatattaagtctc 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)