BAC Information

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BAC

Clone NameMSMg01-212A05
Chromosome1 (Build37)
Map Location 83,688,966 - 83,849,807
singlet/doubletdoublet
Overlap genenone
Upstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212A05.T7 (MSMg01no212_a05.b1)MSMg01-212A05.TJ (MSMg01no212_a05.g1)
ACCAG393524AG393525
length729720
length of high quality
(start - end)
315 (43 - 357)199 (123 - 321)
definitionCHROMAT_FILE: MSMg01no212_a05.b1 PHD_FILE: MSMg01no212_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:39 2005CHROMAT_FILE: MSMg01no212_a05.g1 PHD_FILE: MSMg01no212_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,688,966 - 83,689,276)(83,849,609 - 83,849,807)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATATTCTGACCCTGAAAGAAAACAGGTAGCCAAACTATAATATCATAA
TAGACAATCTTTTATCATCCAATGAGAAATAAATGTTATAAGAAATGATT
ATTTTTAATTATTATTTGATTGACTCAAAGAAGGCAAGTTCTGGAGGTGG
TTGTGAGAAGTACAGATCTCCTCTCCAAGCCCTTCAGATTCAATGACACA
ACCTTTCCTCTGGAAACTATATTTGTCATTTAATATACTTCAATTCCTCG
TAATATACTTCAATTAAAAGTCATGTTGTCTTGCTGCAGTTGGTCTAGGT
CTTTGTGACATGAAAACTTGGACTTGAAAATATCATCTCACTGGGCTTCA
AAATGTTACAACCACGTGTAAGACACTTGTACTATTTTGAGTTTCCACTA
CATGATATAATGCACACAAAGCTAAACTTTGTGCTCAAGGCATATATCAA
TAGCACTGAATATAGAATGCATGATTTGCCATTCTGGAGACTATCCAGTC
ACATCCTGTTTCTGACTTATTACCTCTAATAATGGTTTTTTGTGGAGATA
AAGTATTTCCACTGCTGGAGCACCCATGGTAAGTATGATATTATCCCTTT
TACCTAATGTCTATCACCCATTCTGAAACATCTTAATTTCTCTACCTTAT
TGTTTTTCTCTTTCTCCTAATTAATATGC
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATACCTTTTTAAAATAGATAAAATTTAG
AATATCCTTCCTCTATACCGATCCCATATAATTGGGCAATGGCCTGTGAC
TAATACATTTGATTTAAAGTATCAAAAATGCATTTGAGCCCACTGCAAGA
ATATGTGTGTAAAGTTACTTAAAAGACGATTGGTGATTCAGGCAGCTGCA
CAGCCCAAAAGTACCCTGTGCAGAGTCATGAACAAGTGAAAGCTTTATCC
TTGTAGTTACCTGCCCAACTGGCAGCCAACAGCTCTCCCAACATCTCCTT
TCCTAATGTCCAACAGTTGTTTACTCTTTCCTTCCCTCAGGGGGTGGAAC
CTCATGGTATCCCCCAATTTCATGAGCTTCCTAAATCTTATAAACTTTTT
CTTGTCTAAAGAGAATCTTCAGTCTAGAGGGTAATGGTGTCCAAAAGCTA
AGTCTTTTAAATCTGCCCTCCTATGGAATGAATGATTGGTTCTCCAGCTC
TCAAATTGTTTCCGCTAAAGCTCTAAGCTCTTATGTGATAGTATCAGCAT
ACAGAGCCTTTCCCCCCCATACTTGTCTTATGTCCCCCCACGTCCACTAA
CGCACTAATCACTACACATTCTGTCCGCATGCTCAAAAGTCCTAGCTTAG
TTACTACCGTTTTTTCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_a05.b1 MSMg01no212_a05.b1 CHROMAT_FILE:
MSMg01no212_a05.b1 PHD_FILE: MSMg01no212_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:39 2005
         (315 letters)



>mm_chr1_83688762_83689476
          Length = 715

 Score =  540 bits (279), Expect = e-158
 Identities = 303/311 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatattctgaccctgaaagaaaacaggtagccaaactataatatcataatagaca 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatattctgatactgaaagaaaacaggtagccaaactataatatcataatagaca 264

                                                                       
Query: 65  atcttttatcatccaatgagaaataaatgttataagaaatgattatttttaattattatt 124
           |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcttttaccattgaatgagaaataaatgttataagaaatgattatttttaattattatt 324

                                                                       
Query: 125 tgattgactcaaagaaggcaagttctggaggtggttgtgagaagtacagatctcctctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattgactcaaagaaggcaagttctggaggtggttgtgagaagtacagatctcctctcc 384

                                                                       
Query: 185 aagcccttcagattcaatgacacaacctttcctctggaaactatatttgtcatttaatat 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagcccttcagcttcaatgacacaacctttcctctggaaactatatttgtcatttaatat 444

                                                                       
Query: 245 acttcaattcctcgtaatatacttcaattaaaagtcatgttgtcttgctgcagttggtct 304
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttcaattcctcggaatacacttcaattaaaagtcatgttgtcttgctgcagttggtct 504

                      
Query: 305 aggtctttgtg 315
           |||||||||||
Sbjct: 505 aggtctttgtg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no212_a05.g1 MSMg01no212_a05.g1 CHROMAT_FILE:
MSMg01no212_a05.g1 PHD_FILE: MSMg01no212_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:40 2005
         (199 letters)



>mm_chr1_83849409_83850007
          Length = 599

 Score =  385 bits (199), Expect = e-111
 Identities = 199/199 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatataattgggcaatggcctgtgactaatacatttgatttaaagtatcaaaaatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccatataattgggcaatggcctgtgactaatacatttgatttaaagtatcaaaaatgca 340

                                                                       
Query: 61  tttgagcccactgcaagaatatgtgtgtaaagttacttaaaagacgattggtgattcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttgagcccactgcaagaatatgtgtgtaaagttacttaaaagacgattggtgattcagg 280

                                                                       
Query: 121 cagctgcacagcccaaaagtaccctgtgcagagtcatgaacaagtgaaagctttatcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cagctgcacagcccaaaagtaccctgtgcagagtcatgaacaagtgaaagctttatcctt 220

                              
Query: 181 gtagttacctgcccaactg 199
           |||||||||||||||||||
Sbjct: 219 gtagttacctgcccaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)