BAC Information

Click to search

BAC

Clone NameMSMg01-212B11
Chromosome1 (Build37)
Map Location 94,767,187 - 94,767,547
singlet/doubletsinglet
Overlap geneAnkmy1
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1
Downstream geneDusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212B11.T7 (MSMg01no212_b11.b1)MSMg01-212B11.TJ (MSMg01no212_b11.g1)
ACCAG393572AG393573
length745729
length of high quality
(start - end)
364 (51 - 414)290 (81 - 370)
definitionCHROMAT_FILE: MSMg01no212_b11.b1 PHD_FILE: MSMg01no212_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:45 2005CHROMAT_FILE: MSMg01no212_b11.g1 PHD_FILE: MSMg01no212_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTTTTACCGTTTTGCTACCAGTGTGGCCGCTCCATCGGG
GTCCGCCTCTCACCCTGCCCCCGCTGCTATGGAATCCTGACTTGTAGCAA
GTACTGCAAGACCAAGGCCTGGATTGAGTTCCACAAGAAGGACTGCAATG
ACATCATGGCCATGAGTAGGTTGGGGGCCACGTTGGGATGGGCTGGTGAG
GGGCCCTACTGCTTCCTAGAACAAAGACACAGTGCTGGGGACGGGGTTGG
GGCTGAGAATCACCATCTCCCTTGAAAGCCCCTCAGCTTGATGATAATTT
TCCCAGAATTTACAGCTGAGACTGGCTGGCTGGTTGTGTGTGTATGCATG
AGTGCATGCGTGCACACCCCCCACAGGGCTGGGGGTCTGACTTTGAAGGT
TGACCATATCAGACACTTCCTCTTGCCTGTAAGCAACCCTCTAGCCAAGT
ATGTTGGAACTCTCCTTACCCCCTGCAGCATTGAGGGTGTCCAGAGAGTC
TGTTCCTTCTGCCCCACGTAACATATGCCTTAAAGTTTAGTGTACCCTGG
TCCCTGTCCTTTTCTTCCATATTTCCATGCCTCAACACATTTTCCGAGCG
TTTTCTCTCACACTTCATTATTTCTTATCTTTCTTTCTCCAATCTCATAT
TCACCTCCTATACCTATAATTTCTCTCTCTACTTTGAGAGATTGA
NTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATTGGCTGCAACTAACAG
GGTCCTAGGGGTGAGGTAACTCAGTCATTGGGAGCTCACATGACAGGGTA
CAGCCCAGACCCGGATCTACAGGATTCTGTTTGTCCTTCTGGGTTTCAGT
CCTACATTGTTACGTCCCTGTTTTGTGTGCCCCAGTTCACCCCTGTTTTT
GGAATGGGAATGTTTATTCAATCTGGGGGTTATATACTGTGTTTTGGCTT
CTATAAGAGTCCACTGCTAAATTTTGCTTTGAGTCTTAGAAGAAAATTAG
GACTGTTAGAATTTTTTTTACACCCCCGCCCCCCTCACTGAGATAATTAA
GTGCATTCTACCTTCAGAGACGCCCACGAACTTCAAAGCCAGAGGCAGGA
TGCTATAGTTTGAATATGAAATGTCTCCCACAGGCTCGTGTGTTGAATGT
TTGGTCCCCAGCTGGTAGCACTAACTGAAGAGGTGGCAGAGAATGTAGGA
GGTGGGGCTTGGCTAGAGGAAGTAGGAGACAGAAGGCAGACTTTTGAAGG
TTATACCTCCTCCCTACTCCCTTCTGCTGTGAGGTGGATGCTCCACCCTG
ATTGAATGAAACCAGGAGCCAAATCACATCTTTCTTCCTGAAATTGTTTC
AAGTATTTTATCGTAGTGACAAAAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_b11.b1 MSMg01no212_b11.b1 CHROMAT_FILE:
MSMg01no212_b11.b1 PHD_FILE: MSMg01no212_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:45 2005
         (364 letters)



>mm_chr1_94766983_94767747
          Length = 765

 Score =  652 bits (337), Expect = 0.0
 Identities = 355/361 (98%), Gaps = 1/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttttac-cgttttgctaccagtgtggccgctccatcggggtccgcctctcac 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattcccttttacaagttttgctaccagtgtggccgctccatcggggtccgcctctcac 506

                                                                       
Query: 64  cctgcccccgctgctatggaatcctgacttgtagcaagtactgcaagaccaaggcctgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgcccccgctgctatggaatcctgacttgtagcaagtactgcaagaccaaggcctgga 446

                                                                       
Query: 124 ttgagttccacaagaaggactgcaatgacatcatggccatgagtaggttgggggccacgt 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgagttccacaagaaggactgcaacgacatcatggccatgagtaggttgggggccacgt 386

                                                                       
Query: 184 tgggatgggctggtgaggggccctactgcttcctagaacaaagacacagtgctggggacg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 tgggatgggctggtgaggggccctactgcttcctagaacaaagacacagtgctggggatg 326

                                                                       
Query: 244 gggttggggctgagaatcaccatctcccttgaaagcccctcagcttgatgataattttcc 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 gggttggggctgagaatcaccatctcccttgaaagcccctcagcttcatgataattttcc 266

                                                                       
Query: 304 cagaatttacagctgagactggctggctggttgtgtgtgtatgcatgagtgcatgcgtgc 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 cagaatttacagctgagactggctgggtggttgtgtgtgtatgcatgagtgcatgcgtgc 206

            
Query: 364 a 364
           |
Sbjct: 205 a 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space:   268380
Effective search space used:   268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)