BAC Information

Click to search

BAC

Clone NameMSMg01-212E08
Chromosome1 (Build37)
Map Location 152,274,183 - 152,274,464
singlet/doubletsinglet
Overlap geneTpr
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331
Downstream geneEG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212E08.T7 (MSMg01no212_e08.b1)MSMg01-212E08.TJ (MSMg01no212_e08.g1)
ACCAG393691AG393692
length718715
length of high quality
(start - end)
313 (42 - 354)282 (71 - 352)
definitionCHROMAT_FILE: MSMg01no212_e08.b1 PHD_FILE: MSMg01no212_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:59 2005CHROMAT_FILE: MSMg01no212_e08.g1 PHD_FILE: MSMg01no212_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCATTTCACCAAAAAAAGGTTGATGAATTCATGAAATTCTTAGGTAAA
TGGATAGAACTACTAAACACCACCCTGAGTGAGGTAACCCAATCACAAAA
GAACACACATGGTATGAACTCACTGATAAGTAGATATTAGTCCAAAAGAT
CCAAATACCAAAGATACAATTCACAGACCACATGAAGCTCAGGAAGAAGG
AAGACCATATTATGGGTACTTCAGTCCCTCTTAGAAGGAGAGCAAAATAC
TCACAGGAGCAAATATGTAGATAAAGTGTAGAGCAGAGACTGAAGGAAAG
GCCATTTTTTTTCTGCCCCACCCCCGGATTTATCCCATATACAGTTACCA
AACCCAGACACTATTGAGAATGACAAAAGCTGCATGCTAAAAGGATCCTG
ATATGGCTGACTCCTGAAAGGCCCTGCAAGAGCCTTACAAATACTGAGGC
AGATGCTCACAGCCTAACATTGGACTGATCCCAGAGTCCCCAAAGGAAGA
GTTAGAGAAAGGACTTATGGAGTCACAGAGGTTTGCAACCCCATAGGAAG
AACCTCTTTATCTACCATCCAGAATCCCTTGAGCTACCAGGGACTTAGTC
ATCTACAAAGGATTACACATGGATTTAGCTGCTTATGTATCCCAGGATGA
CTTTGTTATGCATCAGTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGCGTGCGCC
ACCACGCCCTGCAAATGAAGAAAACTAGTCTAGCAAAGTTAGAAAACTCG
CATGGAGGTCACACGCTACGTAACTAGTATTTTCAAGGTAGACTTCTCAC
TAAATGCACTATGCTATATGGTCTCATCCCCAATAGACTTATAACTATTA
GTCTTCTAATGGTGATTGCAATTTTCACTAGTTTCACAACTATTTTACAT
CTCTATTTCTTCCCCTGCTACCCTCATTTCTGTGTCAGTAAATGGCTAAC
TGTACTCACCCGCTTCACGAGAATTCCAACGCTTAACATCCTCTTCCAGT
AGCTTCTTTTCTGCCTGGAGCATACCGCTTTTCTCACTCAGCTCAGCATT
GGCTTCTTGTAAGGGTAAAATGCCTAACTCCAGCTTCCTCACCTGAATAG
AGTCCCAAGCATGTTTATAACAAATGGTATATTCATCCGCGCCGTGGACT
GTTCTCAGTTGGGCCCCTTGCTCCGAGGGAAATTCAGTCTTGTAAAGGTA
TTCTGTTATTCATTGTATAATGACACACTATTATTTACCCCCCCGTTTGT
TGCACCCCAATTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_e08.g1 MSMg01no212_e08.g1 CHROMAT_FILE:
MSMg01no212_e08.g1 PHD_FILE: MSMg01no212_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:59 2005
         (282 letters)



>mm_chr1_152273891_152274572
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatcctcctgcctctgcctcccgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 actttgtagaccaggctggcctcgaactcagaaatcctcctgcctctgcctcccgagtgc 515

                                                                       
Query: 61  tgggactaaaggcgtgcgccaccacgccctgcaaatgaagaaaactagtctagcaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgggactaaaggcgtgcgccaccacgccctgcaaatgaagaaaactagtctagcaaagtt 455

                                                                       
Query: 121 agaaaactcgcatggaggtcacacgctacgtaactagtattttcaaggtagacttctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agaaaactcgcatggaggtcacacgctacgtaactagtattttcaaggtagacttctcac 395

                                                                       
Query: 181 taaatgcactatgctatatggtctcatccccaatagacttataactattagtcttctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taaatgcactatgctatatggtctcatccccaatagacttataactattagtcttctaat 335

                                                     
Query: 241 ggtgattgcaattttcactagtttcacaactattttacatct 282
           ||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 334 ggtgaatgcaattttcactagtttcacaactattttccatct 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)