BAC Information

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BAC

Clone NameMSMg01-212E17
Chromosome1 (Build37)
Map Location 78,520,687 - 78,520,963
singlet/doubletsinglet
Overlap geneMogat1
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb
Downstream geneAcsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212E17.T7 (MSMg01no212_e17.b1)MSMg01-212E17.TJ (MSMg01no212_e17.g1)
ACCAG393707AG393708
length709760
length of high quality
(start - end)		537 (40 - 576)281 (71 - 351)
definitionCHROMAT_FILE: MSMg01no212_e17.b1 PHD_FILE: MSMg01no212_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:01 2005CHROMAT_FILE: MSMg01no212_e17.g1 PHD_FILE: MSMg01no212_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAAATTACTCCATGCATTAACTGTTGAAGCCTGGTCCCTCAACATGGCTG
CCAGCCATTTCTTACTGTTACTGACACAGAGAAATAGCTTGACTCACAGC
AGGGTCAAACTGACCATATGCCCTGTTATGTTCTGAGGTTTGTTAATCCT
AAAGAATTTCACAACCATGAACTCTACTTATGACCAGTCAGAATAAAAGT
CAGTTAGAACTGGTCTGTCTAGGTAGCCAAAGTAGCTTGAGTCAGAGACA
ACCATGGGGCAGTACTTCCTGCACCTGCATATGAGCTGGTTGTGGTTTTT
ACCTTTAGAAACTGACCCTGGGAAACATTTGGGGTCTCAGTCAGCTCCCA
AGTCTGGCCTGTGGCCCTGATCAATCAGTCCTGGGTGAATACACAATAAA
CTATCCCTCTTTAACTGAGATGGATGTATGTGTGGTTTATGGGGTGGCTC
CTGAACCCTAACATTAAGGTCACTTGGGGGATTCATTCTCATTGGCTCCA
AAGTATCTGATTCTGCTGGCCTGGGNCTGAATATGTGCGCTGTGACAAGT
TTCCACACAACGCATAGTCTTCTGGTCTGGGAATCCTTTGTGAGAATCAC
TGGTCTATAATACCACTCATCCGGACTTTCTGCGATGGTGGAACCCATCT
ACATCTGAN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCAGTATATTCAAATGTGGAAAACAGCC
ATGCATCAAATAAATGATAAATTGCCCTCTGCAGAGGTATGCTGAATGCT
GGACCTAGAAAAATGTCTTCCACTATGTCTCACAGTAGCAATAGTGACAT
AAACTAATCAGTGTGTTTGCTAGCTTTGTCATCCTAGGTTGTGTGTAACT
CCTAGGGTTGTGGATGTTGTCATTGGTACAGTGTTTGTCTAGCATGAGCA
AAGCTACCTCCTGATCTACAAGGAAAGAAAAGAAGGGGGAGGGGAGGGGA
GGTTTTTTTTTTCCCCCCCCCCCCCCCNNNNNTTTNNNTNTTNTTNNTNT
TNTTTTTTTTTCCCCCCCCAAAAAAAAAAAAATATNTCTCTGCGTGGGGT
TGGTTCTCTCTCTCTCTCCTCTTTTTTTCTCCATCTCTCTTTTTCTTCTT
CCTCACCCCTCTTCTCCCCCTTACCATCGAAAACTTACTATTATTCCCAC
TTTTCTCTCACCACATTACTCGTTCTTCGCCCTCATTTCATTCCTCCTTC
TTTTTCCCTTATCTCCCCCTTTATTTATATATTAATACCCCCTCCCTACT
CGGCTCTTTCTTACTCCCCCCCTACCCTCTTACCCCTCCCCCTACCCCAA
CTTATCTCACACCAACTTATTTACCCATTCTAACATCCTTTTTTTTCACT
TTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_e17.g1 MSMg01no212_e17.g1 CHROMAT_FILE:
MSMg01no212_e17.g1 PHD_FILE: MSMg01no212_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:01 2005
         (281 letters)



>mm_chr1_78520487_78521166
          Length = 680

 Score =  530 bits (274), Expect = e-155
 Identities = 277/278 (99%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcagtatattcaaatgtggaaaacagccatgcatcaaataaatgataaattgccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcagtatattcaaatgtggaaaacagccatgcatcaaataaatgataaattgccctct 260

                                                                       
Query: 61  gcagaggtatgctgaatgctggacctagaaaaatgtcttccactatgtctcacagtagca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gcagaggtatgctgaatgctggacctagaaaa-tgtcttccactatgtctcacagtagca 319

                                                                       
Query: 121 atagtgacataaactaatcagtgtgtttgctagctttgtcatcctaggttgtgtgtaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagtgacataaactaatcagtgtgtttgctagctttgtcatcctaggttgtgtgtaact 379

                                                                       
Query: 181 cctagggttgtggatgttgtcattggtacagtgtttgtctagcatgagcaaagctacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctagggttgtggatgttgtcattggtacagtgtttgtctagcatgagcaaagctacctc 439

                                                 
Query: 241 ctgatctacaaggaaagaaaagaagggggaggggaggg 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgatctacaaggaaagaaaagaagggggaggggaggg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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