BAC Information

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BAC

Clone NameMSMg01-212F17
Chromosome1 (Build37)
Map Location 78,520,739 - 78,520,963
singlet/doubletsinglet
Overlap geneMogat1
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb
Downstream geneAcsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212F17.T7 (MSMg01no212_f17.b1)MSMg01-212F17.TJ (MSMg01no212_f17.g1)
ACCAG393744
length741799
length of high quality
(start - end)
---232 (128 - 359)
definitionCHROMAT_FILE: MSMg01no212_f17.b1 PHD_FILE: MSMg01no212_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:06 2005CHROMAT_FILE: MSMg01no212_f17.g1 PHD_FILE: MSMg01no212_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTATATTCAAATGTGGAAAA
CAGCCATGCATCAAATATTTGACCCATTGCCCTCTGCAGAGGTATGCTGA
ATGCTGGACCTAGAAAAATGTCTTCCACTATGTCTCACAGTAGCAATAGT
GACATAAACTAATCAGTGTGTTTGCTAGCTTTGTCATCCTAGGTTGTGTG
TAACTCCTAGGGTTGTGGATGTTGTCATTGGTACAGTGTTTGTCTAGCAT
GAGCAAAGCTACCTCCTGATCTACAAGGAAAGAAAAGAAGGGGGAGGGGA
GGGGAGTTTGAGGTTTTTTCCNNGNCCCGGNGCCCCGGTGTATTTTTTTT
TGTTTTTTGTGGGGTTTTTTCCCCCCAAAAACCAACAAAAAAAATTGGTT
GGGGGGGTGGGGCCGTCTTTTATCCTATTCGCACTTATTTTATTATTTTA
TTCTAATCTTTTTTTCTCTTTATCCTAATTTTGCACAAATTATTTTTTTC
CTCTTCCCACCCTATTTTTTGTCCTCTTTTTTTGAACGTTATTAATTTAT
CTTGTTTAACTTCTCTCTTTTTTGATTTTTATATTACTATTTGTTTCAAT
ATTACACATTTTTACTTTTTTTCTTTTTCTCTTTCGTATCGCAACATTCT
AATTATTCTCACTTATTACACATATCCTATCTTCGTTATATTTTTTATTT
TTTTTTTGCACTATAATTTTGTTCCTTTCTCTTTTCTTTTTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_f17.g1 MSMg01no212_f17.g1 CHROMAT_FILE:
MSMg01no212_f17.g1 PHD_FILE: MSMg01no212_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:06 2005
         (232 letters)



>mm_chr1_78520539_78521169
          Length = 631

 Score =  429 bits (222), Expect = e-125
 Identities = 225/226 (99%), Gaps = 1/226 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccctctgcagaggtatgctgaatgctggacctagaaaaatgtcttccactatgtctca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tgccctctgcagaggtatgctgaatgctggacctagaaaa-tgtcttccactatgtctca 259

                                                                       
Query: 61  cagtagcaatagtgacataaactaatcagtgtgtttgctagctttgtcatcctaggttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagtagcaatagtgacataaactaatcagtgtgtttgctagctttgtcatcctaggttgt 319

                                                                       
Query: 121 gtgtaactcctagggttgtggatgttgtcattggtacagtgtttgtctagcatgagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgtaactcctagggttgtggatgttgtcattggtacagtgtttgtctagcatgagcaaa 379

                                                         
Query: 181 gctacctcctgatctacaaggaaagaaaagaagggggaggggaggg 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctacctcctgatctacaaggaaagaaaagaagggggaggggaggg 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 631
Length adjustment: 9
Effective length of query: 223
Effective length of database: 622
Effective search space:   138706
Effective search space used:   138706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)