BAC Information

Click to search

BAC

Clone NameMSMg01-212I13
Chromosome1 (Build37)
Map Location 32,053,569 - 32,054,183
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212I13.T7 (MSMg01no212_i13.b1)MSMg01-212I13.TJ (MSMg01no212_i13.g1)
ACCAG393855AG393856
length719717
length of high quality
(start - end)
678 (42 - 719)633 (71 - 703)
definitionCHROMAT_FILE: MSMg01no212_i13.b1 PHD_FILE: MSMg01no212_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:19 2005CHROMAT_FILE: MSMg01no212_i13.g1 PHD_FILE: MSMg01no212_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAAAATACATTAGTGATAACTTCAAATTATTCAAAAGTCTTGCTTTA
ATAAAAAAGCATTAAAGCCACTACTCCTTGGAATAATTTGACCAAAAGTG
ATTCAAGATGTAATTTCTCTACTCTGTCCCTGCATCTTTTCTTTATCCAG
CTTTTCTATAGCTCATGACTTTTGCTTTATCAATTATCTGTCTTTTGCAT
GTATCAGATCTGTGCCTGTCTGATATTTAAGTGTCTTGTTTTGTCTCATC
CCTACAAATGGATTTTATTATGCATTTGTTTAAAGCAAAGAAACTACCAT
ATTGGAAAAGAATGAGAAATAATTTACAGATATCTTTAACAGACTTTCAA
GAGGGATCAAGTCACTCATGTTAATTGACCCAAACTTATCCAGACAACTA
ACAAAACTGGAAAAAGACCACCATTAGGTAACATCCAAATTCTGTTTCCA
GCATTGGAGGAAAATGTTTATTACATTTTACTCTTAATTAGCATAGAATG
CATACACACATGTACTGCTTTCCAAGTCAGTGGAGTGGGAGAGTGTATAA
AATTGAAGCTATGTATTTAGCTGAGTTTGTAAAAGTTGATTACATGGGAA
ATCCAAGGCAAGAATGATTAGTTGTTACAGTGGTCTATTANAGGTAAATT
AAACAAAGAGGCTGAGGGN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCTCAGAAGCTGTGGAGGTTGCCATATA
ACAAAATTATTTAGGTCGATTGGATGGTATCTGTAATATTTGAATATTTT
CAAAAGTGTATAACTAAGGACTAGTGTGTTGACTCATTGATTAACAGCAT
TCTCTAACTTTACAGAAGACCTGGGTCTGATTCCCAGTACCCACAAGGCA
GATTACAACTGTGTATTATTCCATTTCCTGAAAACTGACACCCGATTCTG
GCCTTTGAGGGCTTCAGCCATAAAAATTATGCTCAGACATATATGGGGAC
AAATCAGCACGCACATAAAATAATTTGAGTATATAAATTAAATGTGTAAT
AATAAATAACAACAGACTTTATGTATCACTGAATGTGTCTTTCTAAAACA
CAATAAAGTTATAATGGCTTTAAAGGGAACTTCCATTTGACACATGGAAC
AAGGTACACTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCCCTTTCTCTCTCTCTCTCTCTCTTTCTTTGNCCAACTTCAGTGG
ATAACAGGATGCATAAAATACCAAAAAAACTGGAAATCTTTCTTGGCAGG
AAGAAAGGAAAGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_i13.g1 MSMg01no212_i13.g1 CHROMAT_FILE:
MSMg01no212_i13.g1 PHD_FILE: MSMg01no212_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:19 2005
         (633 letters)



>mm_chr1_32053369_32054401
          Length = 1033

 Score = 1122 bits (580), Expect = 0.0
 Identities = 611/635 (96%), Gaps = 22/635 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcagaagctgtggaggttgccatataacaaaattatttaggtcgattggatggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcagaagctgtggaggttgccatataacaaaattatttaggtcgattggatggtat 260

                                                                       
Query: 61  ctgtaatatttgaatattttcaaaagtgtataactaaggactagtgtgttgactcattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtaatatttgaatattttcaaaagtgtataactaaggactagtgtgttgactcattga 320

                                                                       
Query: 121 ttaacagcattctctaactttacagaagacctgggtctgattcccagtacccacaaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacagcattctctaactttacagaagacctgggtctgattcccagtacccacaaggca 380

                                                                       
Query: 181 gattacaactgtgtattattccatttcctgaaaactgacacccgattctggcctttgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattacaactgtgtattattccatttcctgaaaactgacacccgattctggcctttgagg 440

                                                                       
Query: 241 gcttcagccataaaaattatgctcagacatatatggggacaaatcagcacgcacataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttcagccataaaaattatgctcagacatatatggggacaaatcagcacgcacataaaa 500

                                                                       
Query: 301 taatttgagtatataaattaaatgtgtaataataaataacaacagactttatgtatcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttgagtatataaattaaatgtgtaataataaataacaacagactttatgtatcact 560

                                                                       
Query: 361 gaatgtgtctttctaaaacacaataaagttataatggctttaaagggaacttccatttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatgtgtctttctaaaacacaataaagttataatggctttaaagggaacttccatttga 620

                                                                       
Query: 421 cacatggaacaaggtacacttttcttccttccttccttccttccttccttccttccttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacatggaacaaggtacacttttcttccttccttccttccttccttccttccttccttcc 680

                                                                       
Query: 481 ttccttccttccttccttcctccctccctccctccctccctccctccctccctctccctt 540
           |                    |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 t--------------------ccctccctccctccctccctccctccctccctctccctt 720

                                                                       
Query: 541 tctctctctctctctctct--ttctttgnccaacttcagtggataacaggatgcataaaa 598
           |||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| |
Sbjct: 721 tctctctctctctctctctctttctttgtccaacttcagtggataacaggatgcataaga 780

                                              
Query: 599 taccaaaaaaactggaaatctttcttggcaggaag 633
           |||||||||||||||||||||||||||||||||||
Sbjct: 781 taccaaaaaaactggaaatctttcttggcaggaag 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)