BAC Information

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BAC

Clone NameMSMg01-212M05
Chromosome1 (Build37)
Map Location 152,828,015 - 152,828,198
singlet/doubletsinglet
Overlap geneEG545370
Upstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream geneLOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212M05.T7 (MSMg01no212_m05.b1)MSMg01-212M05.TJ (MSMg01no212_m05.g1)
ACCAG394002AG394003
length708769
length of high quality
(start - end)
184 (124 - 307)---
definitionCHROMAT_FILE: MSMg01no212_m05.b1 PHD_FILE: MSMg01no212_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:37 2005CHROMAT_FILE: MSMg01no212_m05.g1 PHD_FILE: MSMg01no212_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTATTTCTTTCTTCTAATCTTAAGATAATTCTATGAGGAAAATATAATT
GTTGTCTTTTTCTTCCTTAAAAACTAAGGTTCTGAGAAATGAGTGAATCA
ATAATTCATAATGCACATAAGATTATATTAATGACTGATCAATATTGTCC
TACCTGACGTTAGGATCCATTCACTCCAAACTTATGTTACTCTAACTTAC
TAAAATCTATTGGTCAAGATAAGTCAGATCCACTCTTAATTTCCCTTATA
TCATGTAACAAATAAAGAGAAGTAAAGCTATCAAGGGCATAGCAGACATA
TTTTATACTCACACCCCTCTCCACATTAAGAAATATACTTTTCAGTGCTG
GAGAACCCCCCCGGAGGTAACGAGAACTGACAGTATGCTCTTTCAGAGGA
CCCATGTTCAATTCCCAGCACCCACATGGCAGCTCACAGCTGTCTGCAAC
TCCTGACCTGACACCCACATGCAGGTTTACATGCACACAAAACATTAATG
CCCATGATTTATAACATATATACTTTGAATACAGAACTATACTTTTCTAA
TATCTCCAGACTGATGCCTTACGAGACATTACATTGCATGAATTCTTTAC
TAATACTATAATGCGAGACATTCCTTTCGTACGTGTCTAGGATGACCATC
TCACGGTG
TCCTCCCCTCCACACTCCCCCAAAAAACTCATAGAGCCCCCTTTTTTTAT
TTCTATTATCCCCCACAAACATCTACTCACACTTCCAAACACTCCATTTT
CTTTCTCACACTGCATATTATTTATATAATGATGCGCGTCTCCCCTCTAA
ACAGTCGAGCATATAACCCCGCTGCGTACACACTTATCTGATCGCTCTCC
TTTAACCACAGAATAACACACAAAGTGAAACCTAACAATACGGTTTNNNN
NCCCTCTGCGCCCAAAAAGTTTCACCAAAACATGGGGGGAGATTTAAGGG
GGGTCCCCCCCGGGGGGTTTCGGGGGCGACCCCGTACATCTGGGGGTTTT
CCGTTTCCGGCCACCATTTTTTAGGGTGGAACCACCAAATTAGAAAGGGG
AATCCCGGCGGNNNAATTTCCTTTNNNNCTTAGAGAGACTAGAAACCCAC
ATTTTTTTGAAAGGGGCGGNCCCTTTTTGTAACCCCCCCGGGGAAGGCAC
ACCCCCCACCGGTGGGGGGGCGGTTTAAATAAAAATAGGGGGGAATAAAA
ATAGTGTCCCCGCAAACTTGGGATAGTTAGCGACAAACTGCCCTTAAAAA
CTCCTGTTTGCCTCACAGTCCTTGGGGGAGGGGGGGCCGCCCCTTTCCTT
CGCCCCCCAAAACTGAAACGCCGCGAAGACAGATTTTTGGGCCCCAAACA
AAGAGAAAATCCTATCCTGCTACATATTCTCTTTCTAAAAAGGGGATTCA
ACAACACTCTCGGGTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_m05.b1 MSMg01no212_m05.b1 CHROMAT_FILE:
MSMg01no212_m05.b1 PHD_FILE: MSMg01no212_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:37 2005
         (184 letters)



>mm_chr1_152827815_152828398
          Length = 584

 Score =  325 bits (168), Expect = 1e-93
 Identities = 180/184 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaggttctgagaaatgagtgaatcaataattcataatgcacataagattatattaatg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaggttctgagaaatgagtgaatcactaattcataatgcacataagattatattaatg 260

                                                                       
Query: 61  actgatcaatattgtcctacctgacgttaggatccattcactccaaacttatgttactct 120
           ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct: 261 actgatcaatattgtcctacctgacattagaattcattcactccaaacttatgttactct 320

                                                                       
Query: 121 aacttactaaaatctattggtcaagataagtcagatccactcttaatttcccttatatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttactaaaatctattggtcaagataagtcagatccactcttaatttcccttatatca 380

               
Query: 181 tgta 184
           ||||
Sbjct: 381 tgta 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)