Query= MSMg01no213_e17.b1 MSMg01no213_e17.b1 CHROMAT_FILE:
MSMg01no213_e17.b1 PHD_FILE: MSMg01no213_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:17 2005
(277 letters)
>mm_chr1_88207246_88207922
Length = 677
Score = 513 bits (265), Expect = e-150
Identities = 271/273 (99%)
Strand = Plus / Plus
Query: 5 gaattccataaacaacctcaggctctgttataaagtggcaacttttaggtttggaataac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataaacaacctcaggctctgttataaagtggcaacttttaggtttggaataac 264
Query: 65 aatcggtgtgtgcgccgggaggagggtttgcttactatgaacagaaggcttcaacagcaa 124
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcggtgtgtgtgctgggaggagggtttgcttactatgaacagaaggcttcaacagcaa 324
Query: 125 gaagttcctgtcctcagctaccagctctgtattcaaaggggacttgaaagggggcaaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagttcctgtcctcagctaccagctctgtattcaaaggggacttgaaagggggcaaaag 384
Query: 185 gccatcccactgttacccagagctgggcggcctcctccagcatatttgcataactaaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccatcccactgttacccagagctgggcggcctcctccagcatatttgcataactaaagg 444
Query: 245 agaccacttaaggaatcctggctttcacaaagg 277
|||||||||||||||||||||||||||||||||
Sbjct: 445 agaccacttaaggaatcctggctttcacaaagg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no213_e17.g1 MSMg01no213_e17.g1 CHROMAT_FILE:
MSMg01no213_e17.g1 PHD_FILE: MSMg01no213_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:17 2005
(287 letters)
>mm_chr1_88363233_88363919
Length = 687
Score = 480 bits (248), Expect = e-140
Identities = 282/296 (95%), Gaps = 9/296 (3%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtctc-gaaaaaaa--aacaac--c--c- 52
|||||||||||||||||||| ||||||||||||||| |||||||| |||||| | |
Sbjct: 548 caggacagccagggctacaccgagaaaccctgtctcggaaaaaaaacaacaacaacaaca 489
Query: 53 -aaagaatactttcccctcccccagaacaactttttttagagcttaaaagaaaatcccca 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaagaatactttcccctcccccagaacaactttttttagagcttaaaagaaaatcccca 429
Query: 112 aggtggacaaggtgtaagtttcagcagctacccttaggagaaaaagctgttaatatggcg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggtggacaaggtgtaagtttcagcagctacccttaggagaaaaagctgttaatatggcg 369
Query: 172 gccaatcagccgcgtggcagacaagcatggtgagaggagacactctagagaaatggtaag 231
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 gccaatcagccgcgtggcagacaagcatggtgagaggagacactgtagagaaatggtaag 309
Query: 232 gaagcccacagtggtgttctgaaggacatatatcccctaaagactcggatatttga 287
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaagctcacagtggtggcctgaaggacatatatcccctaaagactcggatatttga 253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
