BAC Information

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BAC

Clone NameMSMg01-213M19
Chromosome1 (Build37)
Map Location 66,416,243 - 66,464,252
singlet/doubletdoublet
Overlap geneMtap2
Upstream genePthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213M19.T7 (MSMg01no213_m19.b1)MSMg01-213M19.TJ (MSMg01no213_m19.g1)
ACCAG394676AG394677
length720720
length of high quality
(start - end)		682 (39 - 720)291 (430 - 720)
definitionCHROMAT_FILE: MSMg01no213_m19.b1 PHD_FILE: MSMg01no213_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005CHROMAT_FILE: MSMg01no213_m19.g1 PHD_FILE: MSMg01no213_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,416,243 - 66,416,919)(66,463,962 - 66,464,252)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TAAGACAAATACTTCAGTGAGCGGGCGCCAGAGCCTGAGTCATTTCAACT
CACTGTGAGCAGAGCATGAGGCAAGACCCAGTAGTAATCAATCCGGGATG
AAGTGCGAAGGGCAAAGCAAGACAAAGGACATTTTCAGTGCCACAGTGCT
GTAGCTCTCTAACTCCTTGATACCTGAGAGCAGTGTTTAGGTAAGTCCTG
ATGGATTACTCTTTAGGGACATATAGATACAATTATAGTGAGTCTTATTT
TGGAAACAAGAAATTTCAAGGAATCTTTGTTGACAAATCAAGAGGAATTT
TGAAGTTACAGTGTCATATACACACATGCATATATAAAATGTCATGCACA
CATACATAGTGGATCGTTTATGTGCTAAAAAAGATACTCTTAGAACAAAG
CATAGAGACAGGCACAATTTTCAAGGAAAATAGCAAGCTCACATATGTTT
ATGAAAATAATAGTCTTATGGTAGAATGGAGTAACTGTTTCATAATATAG
AATATGTATGAAAGGCTGGGACTAAAGCACTAACACACATATGAGGCTCT
AGATTCAATCCCTAGTCCTGAAAACATTAACTGGAATGTTTGTGCATAGG
AAAAAAAAACGTTTTCCACTATAGTTTTTGATTATGGGATGTCTATTCTT
CAGCTAATGAGCCTGGCACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAAAAAAGATTTCTATTTTATGTGCGTGGG
TATTTTGCCTATTGCCCCTGTACAAGATATGTACAGTGCACAGAGAGGCC
CGAAGATGAGGTTGAATTCTTCGAAATTGGAGTCATAGATATTGTGGACT
GACATGTGGGTGACAGGAACCAAACTCAAGTCCTTTGTAAGAAGAGTAAG
TGTTTATAAAAATAAAGCCATTGCTACAGCTCCTTTCCTAATGATTTCTC
CCACGTTTTATTCTTTTCTTCTATTAGATCTTTAAGCTTATGGTTGTGTA
ATTTTGTGATTATACACACCCCCCCCAAGGCAAAACAAGTCTTTCCCCTC
CTCATATGTAGTCCAGGACTAACAAAATAGCCCAGGCTGGACTCACACTG
GAGATCGACCTAAAGATTCACTTTCCTCTGCCTCCCCAGCACTAGAATTA
TAGAAAACATATCTATGTCTAACTTAATTCAGTCATAAGGGAGTGGAGTT
TTAACTTAGATTTCTGCACATTGAATTATATAAGAACATTTGGCAGCTGG
GATGGACATCTTTAAGAAAATCTCAAAGATGAAGTACAGGAGATTGAAAA
GGTGTTCCCTTTGAACATGATGAATAAAATCTGATAGTATAGACATCAGT
TTCTTTGTTCTTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_m19.b1 MSMg01no213_m19.b1 CHROMAT_FILE:
MSMg01no213_m19.b1 PHD_FILE: MSMg01no213_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:55 2005
         (682 letters)



>mm_chr1_66416039_66417120
          Length = 1082

 Score = 1309 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaagacaaatacttcagtgagcgggcgccagagcctgagtcatttcaactca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaagacaaatacttcagtgagcgggcgccagagcctgagtcatttcaactca 264

                                                                       
Query: 65  ctgtgagcagagcatgaggcaagacccagtagtaatcaatccgggatgaagtgcgaaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtgagcagagcatgaggcaagacccagtagtaatcaatccgggatgaagtgcgaaggg 324

                                                                       
Query: 125 caaagcaagacaaaggacattttcagtgccacagtgctgtagctctctaactccttgata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaagcaagacaaaggacattttcagtgccacagtgctgtagctctctaactccttgata 384

                                                                       
Query: 185 cctgagagcagtgtttaggtaagtcctgatggattactctttagggacatatagatacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgagagcagtgtttaggtaagtcctgatggattactctttagggacatatagatacaa 444

                                                                       
Query: 245 ttatagtgagtcttattttggaaacaagaaatttcaaggaatctttgttgacaaatcaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatagtgagtcttattttggaaacaagaaatttcaaggaatctttgttgacaaatcaag 504

                                                                       
Query: 305 aggaattttgaagttacagtgtcatatacacacatgcatatataaaatgtcatgcacaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggaattttgaagttacagtgtcatatacacacatgcatatataaaatgtcatgcacaca 564

                                                                       
Query: 365 tacatagtggatcgtttatgtgctaaaaaagatactcttagaacaaagcatagagacagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacatagtggatcgtttatgtgctaaaaaagatactcttagaacaaagcatagagacagg 624

                                                                       
Query: 425 cacaattttcaaggaaaatagcaagctcacatatgtttatgaaaataatagtcttatggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaattttcaaggaaaatagcaagctcacatatgtttatgaaaataatagtcttatggt 684

                                                                       
Query: 485 agaatggagtaactgtttcataatatagaatatgtatgaaaggctgggactaaagcacta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaatggagtaactgtttcataatatagaatatgtatgaaaggctgggactaaagcacta 744

                                                                       
Query: 545 acacacatatgaggctctagattcaatccctagtcctgaaaacattaactggaatgtttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acacacatatgaggctctagattcaatccctagtcctgaaaacattaactggaatgtttg 804

                                                                       
Query: 605 tgcataggaaaaaaaaacgttttccactatagtttttgattatgggatgtctattcttca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgcataggaaaaaaaaacgttttccactatagtttttgattatgggatgtctattcttca 864

                            
Query: 665 gctaatgagcctggcac 681
           |||||||||||||||||
Sbjct: 865 gctaatgagcctggcac 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no213_m19.g1 MSMg01no213_m19.g1 CHROMAT_FILE:
MSMg01no213_m19.g1 PHD_FILE: MSMg01no213_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:56 2005
         (291 letters)



>mm_chr1_66463689_66464379
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcccaggctggactcacactggagatcgacctaaagattcactttcctctgcctccccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcccaggctggactcacactggagatcgacctaaagattcactttcctctgcctccccag 505

                                                                       
Query: 61  cactagaattatagaaaacatatctatgtctaacttaattcagtcataagggagtggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactagaattatagaaaacatatctatgtctaacttaattcagtcataagggagtggagt 445

                                                                       
Query: 121 tttaacttagatttctgcacattgaattatataagaacatttggcagctgggatggacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttaacttagatttctgcacattgaattatataagaacatttggcagctgggatggacat 385

                                                                       
Query: 181 ctttaagaaaatctcaaagatgaagtacaggagattgaaaaggtgttccctttgaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttaagaaaatctcaaagatgaagtacaggagattgaaaaggtgttccctttgaacatg 325

                                                              
Query: 241 atgaataaaatctgatagtatagacatcagtttctttgttcttctttcttt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaataaaatctgatagtatagacatcagtttctttgttcttctttcttt 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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