BAC Information

Click to search

BAC

Clone NameMSMg01-214E16
Chromosome1 (Build37)
Map Location 38,329,224 - 38,329,507
singlet/doubletsinglet
Overlap geneAff3
Upstream geneInpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123
Downstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214E16.T7 (MSMg01no214_e16.b1)MSMg01-214E16.TJ (MSMg01no214_e16.g1)
ACCAG394991AG394992
length714718
length of high quality
(start - end)		318 (45 - 362)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no214_e16.b1 PHD_FILE: MSMg01no214_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:34 2005CHROMAT_FILE: MSMg01no214_e16.g1 PHD_FILE: MSMg01no214_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATCACAGTCATTTCCTTAATGTTTCTGTATGGTCTCTTCTCTCTGAATCC
ATGGCATTCACCACTCCAGGGATCAGATGCTAGCCTAGAATAGAGGCTCT
CAGCCTTCCTAATGCTGGCATCCTTTAACGCAGTTCCTCACGCTGGGGTG
ACCCCCAACCATAAAATTATTTTCATTGCTACTTCATAACTGCAATTTGC
TACTGTTATGATGGCCTTAGGTGACCCCTGGGAAGGGGTCGTTTCATCCC
CAAAGGGGTCATGAGCCACAGGCTGAGAACTACTGGCCTAGAACAAGCTT
GTCTGTCTGATTCAGGACTGTCACCTACCTATCTACCTATCTTATTCATC
ATTTATCTATTTACCGATTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCATCAATCAACCTATTTACCCACCTATCTAC
CTACCCTACTCATCATTTGCTGTCTGTCTATTCACCTATCACTCACCTGT
CACCAATCTGTCAATCAGCTATCATTGAATGGTGTCCCAGGCCTTACACA
TACCAGGCAAACAACACCCCGATCTCTACCTCCAGCCTCTTAGCTATGTT
TCAAATTTTCCAGTCAAAAGCCTAGAGGCAGAATCAGTTAGGTTCTTCTC
TGTGAGAATATACT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGTCAGATCTCAGGCAGGTGGAGA
TAGTGGCAGCTCCTGCTGTAGAAACAAATCTGAAAATCAAATGGTGCGAT
TAAAACTCAGATTTGTTTTTAAAGCTGTTAATAGGGAGCAAAATGAAATG
AACTTTAAATAAAAGACTGAGGTGTCTTTGCAGAGCCTGAAATGGCAAGT
GTGGCCAGGAAATCCAGCCAATTAAAGGCTCTGCTCCATGGAGCAGTGTC
GGTACACCCTAAGGAGGAGGCACTTGCTGTGTGGGTCAGCAGCTCCTCAG
CAGGATGGATCTATTTATACACCGCCGCGCACCTGTTACAGGCTGTTGTT
TCTGCTCTGAGATTGCCAGAAAGTAAGCGTGGCTACAGTGTAGCTGTTTC
TCATGCTCCTCAAAGACAATGATGCTTGGGACTGGAGAGATGGCTCAGCC
GTTAAGATCTAGCAACCACATGCTGGCTCCCAACCATCTATAATGGGATC
CGATGCCCTCTTCTGGTGTGTCTGAAGTCAGTGACATAGTCATAGAAAAT
AAATAAATAAACCTTTAATCTGATTTTAAAAAGAGAGAGGAAGTTAGGTA
GTCAAATGTTAAGTTGCAAAGATTGTAGCCAAGTCTTTCTTGTGAGAGCG
CTGAGTTTGCTGACAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_e16.g1 MSMg01no214_e16.g1 CHROMAT_FILE:
MSMg01no214_e16.g1 PHD_FILE: MSMg01no214_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:34 2005
         (284 letters)



>mm_chr1_38329024_38329707
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtcagatctcaggcaggtggagatagtggcagctcctgctgtagaaacaaatctgaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 484 atagtcagatctcaggcaggtggagatggtggcagctcctgctgtagaaacaaatctgaa 425

                                                                       
Query: 61  aatcaaatggtgcgattaaaactcagatttgtttttaaagctgttaatagggagcaaaat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 424 aatcaaatggtgcgattaaaactcagatttgtttttaaagccgttaatagggagcaaaat 365

                                                                       
Query: 121 gaaatgaactttaaataaaagactgaggtgtctttgcagagcctgaaatggcaagtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 364 gaaatgaactttaaataaaagactgaggtgtctttgcagagcctgaaatggcaagtgtga 305

                                                                       
Query: 181 ccaggaaatccagccaattaaaggctctgctccatggagcagtgtcggtacaccctaagg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccaggaaatcaagccaattaaaggctctgctccatggagcagtgtcggtacaccctaagg 245

                                                       
Query: 241 aggaggcacttgctgtgtgggtcagcagctcctcagcaggatgg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aggaggcacttgctgtgtgggtcagcagctcctcagcaggatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |