BAC Information

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BAC

Clone NameMSMg01-214H06
Chromosome1 (Build37)
Map Location 54,742,206 - 54,820,959
singlet/doubletdoublet
Overlap geneAnkrd44
Upstream geneLOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
Downstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214H06.T7 (MSMg01no214_h06.b1)MSMg01-214H06.TJ (MSMg01no214_h06.g1)
ACCAG395098AG395099
length720730
length of high quality
(start - end)
232 (117 - 348)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no214_h06.b1 PHD_FILE: MSMg01no214_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:46 2005CHROMAT_FILE: MSMg01no214_h06.g1 PHD_FILE: MSMg01no214_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,820,728 - 54,820,959)(54,742,206 - 54,742,445)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTC
TGTATCCCATGCTGTGTCTGAATTTGTAACTTGCTTGCCTTTTCACCCAA
ATGCTGGCATTCTGCGATTACACACTCAATACCAATGCAACTTTTAAAAG
GTGGCGCTACTAATATATTGTCAAACAGCCACCACCTTTGCTACATCTCA
TTTAAGTCTTAGTTATGAGTCATCTTTTTTCTTCCCATGAGATTTATATA
ATGTCCAGTACATAGTAGGTACTCAATAAATGCTCATTGATTATTTTCCA
TGAGGCAGCTTCCCCCTCTCCTCCCGACTCCCAGATCAGGAAATACTGTT
TTTTATTTCCCNTACGAACCACCTTTTTTTGTGTGGTGAGTTGTCGCATT
GTCTTACAAAACAAAAAAAAAAACTTGCTGCTTTATTTGTCAAGGTCACC
TGGACGTTGTGGCGCTGCTCATTAACCATGGTGCAAAAGTTACCTGCTAG
GATAATAAGGGTTACACCCCGATGCACGCTGTATTCTCTAATGGGTAGAT
CAGTGTTGTCAAACATCTCCTGAACCTGGGGGTGGAGCTAAGCTCTGATG
GCTGCATTGCGTCGGCTTCACGTCCTTCTGTTTGTCCCTTCTTCTGTTCT
GAAGCGAAATCCTGCTCGCATTTTTATTCAAGTGGAGAATATATTATTCT
CCCTGCTTTATGTATTCACT
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACCCTAGAAATGGGGAGCCAGTTA
TATTTCCACTGTGGAATTTCTAAATCATGTCTTAAGTTGGAAAGAACCAA
TATTCTCAAATTAAGGAAAAAGCAACAGAAGCAAAAGGAAGCAGAAGTCT
CATTCGTTCCTTTGTAAGCAGAATCCATTCAATAATTATTTGTTGAGGAT
TGTGCTAGGCTCTGAGATCACAGCTCTGATCAAAGACTCTACCCATACAG
CACTAAGGATCTAGAAAGTAGAATATACATGCTTCATTGGTTGAACGTCA
GAGAGTGTGGTTTCGTTCTCCCAAGCGATGCCCTCCAGCTTACCAGCGTT
GGTGATAGAAGAGCTGGTCCCACAAGAAAGACACAATCTGGTCATAGAAG
AGACCTGTGCAGTGAACTAGGGTTTGAATAATAGTGAGGCTATTCAGTGG
GATATGTTTAACTTAACGCAGTGTTTCTCACCCCTCCTAGCGCTGAGACC
CTTTAAGACAGCCCCTCATGTTGTGGTGATGCTCACTACAAAATTACTTT
TGTTGCTACTTCATAACTGCAATTTTGCTACTGTTATGAACTGTAACGTG
GAAATCTGCGTTCTCTAGTGGTCTTAGGAAACTCTTATGAGACATTTTAA
TCCTAAGGGGTCATGACCACTGGTTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_h06.b1 MSMg01no214_h06.b1 CHROMAT_FILE:
MSMg01no214_h06.b1 PHD_FILE: MSMg01no214_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:46 2005
         (232 letters)



>mm_chr1_54820647_54821278
          Length = 632

 Score =  402 bits (208), Expect = e-117
 Identities = 226/232 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacacactcaataccaatgcaacttttaaaaggtggcgctactaatatattgtcaaac 60
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 313 attacacactcaataccaatacaacttttaaaaggtggtgctactaatatattgtcaaac 254

                                                                       
Query: 61  agccaccacctttgctacatctcatttaagtcttagttatgagtcatcttttttcttccc 120
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 253 agccaccacctttgctacatctcattcgagtcttagttatgagtcatcttttttcttccc 194

                                                                       
Query: 121 atgagatttatataatgtccagtacatagtaggtactcaataaatgctcattgattattt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 193 atgagatttatataatgtccagtacatattaggtactcaataaatgctcattgattattt 134

                                                               
Query: 181 tccatgaggcagcttccccctctcctcccgactcccagatcaggaaatactg 232
           || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tcaatgaggcagcttccccctctcctcccgactcccagatcaggaaatactg 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no214_h06.g1 MSMg01no214_h06.g1 CHROMAT_FILE:
MSMg01no214_h06.g1 PHD_FILE: MSMg01no214_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:46 2005
         (240 letters)



>mm_chr1_54742006_54742645
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccctagaaatggggagccagttatatttccactgtggaatttctaaatcatgtcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccctagaaatggggagccagttatatttccactgtggaatttctaaatcatgtcttaa 260

                                                                       
Query: 61  gttggaaagaaccaatattctcaaattaaggaaaaagcaacagaagcaaaaggaagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggaaagaaccaatattctcaaattaaggaaaaagcaacagaagcaaaaggaagcaga 320

                                                                       
Query: 121 agtctcattcgttcctttgtaagcagaatccattcaataattatttgttgaggattgtgc 180
           ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctcagtcgttccttcgtgagcagaatccattcaataattatttgttgaggattgtgc 380

                                                                       
Query: 181 taggctctgagatcacagctctgatcaaagactctacccatacagcactaaggatctaga 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 taggctctgagatcacagctctgatcaaagactctacccatgcagcactaaggatctaga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)