BAC Information

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BAC

Clone NameMSMg01-214N20
Chromosome1 (Build37)
Map Location 140,811,450 - 140,811,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik
Downstream geneLOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214N20.T7 (MSMg01no214_n20.b1)MSMg01-214N20.TJ (MSMg01no214_n20.g1)
ACCAG395330AG395331
length804845
length of high quality
(start - end)
319 (96 - 414)180 (73 - 252)
definitionCHROMAT_FILE: MSMg01no214_n20.b1 PHD_FILE: MSMg01no214_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:19 2005CHROMAT_FILE: MSMg01no214_n20.g1 PHD_FILE: MSMg01no214_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTTTTTTCCTATTTTCCCCTCTTTTAACAATTGTTTTNNNNGATT
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAATTCCAAAGTGTGTCTGCCACATAGTGGGCCTAATAAACTGT
GTCTGAGTTGCAAACTGTGTCACTCTGAATAAGAGTAAAACTATTAAGGA
ACCAGAGTTTCCTAGGTTTTGTTTTATGCCACCTACTTGTCAGGAAACAG
AAAACAATCTTCTTGTTGGTGGGTCGAAAGAAAAGGGAAGAATTTACCTT
ATCTTGGGAATAGAAAAAATATTTCAAGAACTGAAATTTAATATGTCTCT
TTGACATGCATAAACCTTAAAGAGTTCATATAAGCAATTTGGAGAATTTT
GTTTGTTTGTTTTTTAGTTTTGCCCCCCCCCACACTGCTTTGGTGTCTTA
TTCAAAAGTTCATTCTGCCAGGCGTGAAGAAAAACGCCTTTAATCCCAGC
ACTCTGGAGGCAGAGGCAGAGGCACGCGTATTTCTGAGTTCGAGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAAACAGAGAAATCC
TGTCTCGAAAAAACTAACCAACAAACAAACAAACAAAGTTAATCCTTTGA
TGAGCACCTTTATCTTACGTTCAGAAAGAGGCTTACAATGTATGCCAGTG
CCTTACAACTGTTGTGAATGTCTTATATATGTTGTGAATGGCTGCTTAAC
ATTGATTCAGGCATTTAAATTGAATGAATCCAACTCCGATTTACACCACC
TCAC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTACAGATGGTTGTGAACCACTATGT
GGTTGCTGGGAATTGAACTCGGAGCTTATGGAAGAGCAGTTAGTGCTCTT
ATCCACTGAGCCATCTCTCCAGCCCCCTCATTCTAAGATGAAGAAGAAGA
AGGAGGAGGAGAAGAAGGAGGAGGAAGGAGAAGGAAGAGGAAGGAGAAGG
AGGAGATTGATTCCCCCCTTCCCTCCCTATCTTTTTTTATTCCCTATTTC
CTACGCCTTTCCCCCTCTTTTTTTCATCCTTCTCTTCCTCCGTTTCCCCC
AGATTTTTGGATGACTCCCAAAAACGAAAACCCAGAAATATTTTTTTTAA
TGTTGTCTCGTGTGTGCCCCCCCAAAAAATATAAAAAAAAACTTGCCGCG
GGGTGGGCGCTCTCTTTTTATTCTCACTCCTTTTTTTTTATTCTTTTTCC
CTTTTTTTTTTCTTTTCTGCTCATCCTTCTTTATCTTTTTTTACCCTCCC
CCCCCTTCTTTCATTTATATCCATTTCCTTTATATCTTCCCCCATATTCT
CCCTTTTTTTTCCTCAATTAACCCATTCCTTTTATTCTTACCTACATTCC
TTCCTCCTTACCTTTTTCGTTTCCATCTTTTTTGCTTTCCTTGTTTTTTT
TATCCGGTCTTTGTGGAGGTTTATATCATTTTTCTTTTACCTTATATTAT
TTCACCCCTTCACCTTATCCCCACCCCCAACACTTTATTTAGCCCGCGCT
TTTTTCTTTTTTTCCCCCTCTCCACCTTTTTTCCGTTTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_n20.b1 MSMg01no214_n20.b1 CHROMAT_FILE:
MSMg01no214_n20.b1 PHD_FILE: MSMg01no214_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:19 2005
         (319 letters)



>mm_chr1_140811246_140811963
          Length = 718

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaattccaaagtgtgtctgccacatagtgggcctaataaactgtgtctgagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaattccaaagtgtgtctgccacatagtgggcctaataaactgtgtctgagtt 264

                                                                       
Query: 65  gcaaactgtgtcactctgaataagagtaaaactattaaggaaccagagtttcctaggttt 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaaactgtgtcatt-tgaataagagtaaaactattaaggaaccagagtttcctaggttt 323

                                                                       
Query: 125 tgttttatgccacctacttgtcaggaaacagaaaacaatcttcttgttggtgggtcgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttttatgccacctacttgtcaggaaacagaaaacaatcttcttgttggtgggtcgaaa 383

                                                                       
Query: 185 gaaaagggaagaatttaccttatcttgggaatagaaaaaatatttcaagaactgaaattt 244
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 gaaaagggaagaatttgccttatcttgggaatagaaaaaatatttcaggaactgaaattt 443

                                                                       
Query: 245 aatatgtctctttgacatgcataaaccttaaagagttcatataagcaatttggagaattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatatgtctctttgacatgcataaaccttaaagagttcatataagcaatttggagaattt 503

                        
Query: 305 tgtttgtttgttt 317
           |||||||||||||
Sbjct: 504 tgtttgtttgttt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)