BAC Information

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BAC

Clone NameMSMg01-215E23
Chromosome1 (Build37)
Map Location 162,697,472 - 162,697,746
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215E23.T7 (MSMg01no215_e23.b1)MSMg01-215E23.TJ (MSMg01no215_e23.g1)
ACCAG395603AG395604
length702707
length of high quality
(start - end)
216 (431 - 646)275 (428 - 702)
definitionCHROMAT_FILE: MSMg01no215_e23.b1 PHD_FILE: MSMg01no215_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:56 2005CHROMAT_FILE: MSMg01no215_e23.g1 PHD_FILE: MSMg01no215_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAACGAAGGCGCGGAAT
TCAAGGCCTTTCCCAAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTATATGCGAGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATT
CAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGTTCCTAATTTTCCACCAGAGAACTCCTAAACCTGAT
AAAATGNTTCGTTGACGCCCCCCCCCACAAAATTAACTCAAACAAGTCAA
TGGCCTTTCTCTACACCAAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGAC
TCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCA
TGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGCAAT
CTACAGATTTAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATG
AN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAGGTTGAGGCCAGAGAATAGTGAG
TTTGAGGCAAACCTGGAACCCAGATAACAAAGGAAAGATGGGCCAGTCTT
ACGCGCGTTCGCGACCGGCCAGGAAAGACGCAACAAGCCAGAATCTTCTG
CAGCAAAGCTTTATTGCTTACTCAGGAGCAAGAGAGGAAGAGCGTGGCAG
AGAGAGGCAGAGAGGAAGAGAGAGAGAGACGCAGAGAGAGGCAGAGAGCA
GAGAGAGAGAGAGGCAGAGAGCAGAGGAAAAGACGAAGAGAAAGAGACGA
AGAAAGAATATTTTATTAGCCCCACCCCCCCAACCCCGTCCCTTTTAAGG
AGAATTATCCTCCGCCTAGCACGCGTCACTCTCTGATTGGCTGCAGCCCA
TCGGCCCAGTTGTCATCACGAGAAAGGCAGAGCACATGGCGGGAAAACTG
CCCCTGCACATGTGCAGATTATTTACTTCTTAGAACACAGCTGTCAGCGC
CATCTTGTAATGGCAAATGTGAATGCGGCTCCCCACAGGCCAGATTGTAA
ACATTAGGCTGTAGCACTGGTAGACATTCTAGTTTTTGAGAGTAACGAAA
CCAGATGACATTGATTTAATCTTTTTCATAGTATTCAGAATATTAAAGCA
AGTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_e23.g1 MSMg01no215_e23.g1 CHROMAT_FILE:
MSMg01no215_e23.g1 PHD_FILE: MSMg01no215_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:56 2005
         (275 letters)



>mm_chr1_162697112_162697786
          Length = 675

 Score =  509 bits (263), Expect = e-149
 Identities = 272/275 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctctgattggctgcagcccatcggcccagttgtcatcacgagaaaggcagagcacat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 actccctgattggctgcagcccatcggcccagttgtcatcacgagaaaggcagagcacat 576

                                                                       
Query: 61  ggcgggaaaactgcccctgcacatgtgcagattatttacttcttagaacacagctgtcag 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 575 ggcgggaaaactgcccctgcacatgtgcagattatttactacttagaacacagctgtcag 516

                                                                       
Query: 121 cgccatcttgtaatggcaaatgtgaatgcggctccccacaggccagattgtaaacattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cgccatcttgtaatggcaaatgtgaatgcggctccccacaggccagattgtaaacattag 456

                                                                       
Query: 181 gctgtagcactggtagacattctagtttttgagagtaacgaaaccagatgacattgattt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gttgtagcactggtagacattctagtttttgagagtaacgaaaccagatgacattgattt 396

                                              
Query: 241 aatctttttcatagtattcagaatattaaagcaag 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 395 aatctttttcatagtattcagaatattaaagcaag 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)