Query= MSMg01no215_l16.b1 MSMg01no215_l16.b1 CHROMAT_FILE:
MSMg01no215_l16.b1 PHD_FILE: MSMg01no215_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:28 2005
(320 letters)
>mm_chr1_150710618_150711337
Length = 720
Score = 509 bits (263), Expect = e-148
Identities = 288/307 (93%), Gaps = 19/307 (6%)
Strand = Plus / Minus
Query: 30 cacccacaattatgtgcacaaacatatgaatgtgtgtgcgtgtgttttg----------- 78
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cacccacaattatgtgcacaaacatatgaatgtgtgtgcgtgtgttttgtgtgtgtgtgt 661
Query: 79 cccgtgtgtgtatcatagatgtt-----ttttaagttcttatttatttttgaaacatggt 133
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 660 ---gtgtgtgtatcatagatgtttttgattttaagttcttatttatttttgaaacatggt 604
Query: 134 ctctcattgtagatggtatcaaattcagacttctttgcctcacctctaatctgggattaa 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctctcattgtagatggtatcaaattcagacttctttgcctcacctctaatctgggattaa 544
Query: 194 aaatatgcaccactctgcctggcgaagtccatggaattttagtagtcctgtgcattgaag 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaatatgcaccactctgcctggcgaagtccatggaattttagtagtcctgtgcattgaag 484
Query: 254 ttaatcaatgtggtatttcacctcttttactaaatgttgctaattcaatagaaatcaata 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttaatcaatgtggtatttcacctcttttactaaatgttgctaattcaatagaaatcaata 424
Query: 314 gatgctt 320
|||||||
Sbjct: 423 gatgctt 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_l16.g1 MSMg01no215_l16.g1 CHROMAT_FILE:
MSMg01no215_l16.g1 PHD_FILE: MSMg01no215_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:29 2005
(599 letters)
>mm_chr1_150574263_150575261
Length = 999
Score = 1044 bits (540), Expect = 0.0
Identities = 585/600 (97%), Gaps = 2/600 (0%)
Strand = Plus / Plus
Query: 1 agttttacccaatggccttttgtgacatttttgtggtgcataaactttattgaactttat 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agttttacccaatggccttttgtgacatttttgtggtgcatacactttattgaactttat 260
Query: 61 tttttattaagtatcactatagaaacaaatctctgaggctatttatgagggtttatttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttattaagtatcactatagaaacaaatctctgaggctatttatgagggtttatttat 320
Query: 121 aagagatggattaaggttgaaaaaccaaatgaattaagggtggaaagccatactaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagatggattaaggttgaaaaaccaaatgaattaagggtggaaagccatactaaatgt 380
Query: 181 tgtcagcactattctatgttcgatggtcccaaactgagtaaaactgataaattgagattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tgtcagcactattctatgttcgatggtcccaaactgagtaaaactgataaactgagataa 440
Query: 241 atagaagcatccatctctctgcttcctgacagtaggcacatgaggtgttctcttccttca 300
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 acagaagcatccatctctctgcttcctgacagtaggcacacgaggtgttctcttccttct 500
Query: 301 gctccatcatccctaggaaccatagcataattcagaataaaccttcccttcctccagttg 360
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 gctccgtcatccctaggaaccatagcataactcagaataaaccttcccttcctccagttg 560
Query: 361 ctttctccaggtgttttaccatggtaccaattcaggtaactaatatagctaatagagagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttctccaggtgttttaccatggtaccaattcaggtaactaatatagctaatagagagg 620
Query: 421 ctatttatatacagtctagacagcagtctcccaacatcttttaatcatctatcctattct 480
|| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtttatatacagcctagccagcagtctcccaacatcttttaatcatctatcctattct 680
Query: 481 tctgtcagtttatttttaagtttaagctctactatattttagcttatgcaatttgaatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgtcagtttatttttaagtttaagctctactatattttagcttatgcaatttgaatat 740
Query: 541 agtt-agtatttattttttgtattctataatgtttaccaatataatttttctcacacaat 599
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 agttca-tatttattttttgtattctataatgtttaccaatataatttgtctcacacaat 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
