BAC Information

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BAC

Clone NameMSMg01-215N07
Chromosome1 (Build37)
Map Location 101,018,529 - 101,018,682
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215N07.T7 (MSMg01no215_n07.b1)MSMg01-215N07.TJ (MSMg01no215_n07.g1)
ACCAG395937AG395938
length763859
length of high quality
(start - end)
131 (156 - 286)165 (179 - 343)
definitionCHROMAT_FILE: MSMg01no215_n07.b1 PHD_FILE: MSMg01no215_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:35 2005CHROMAT_FILE: MSMg01no215_n07.g1 PHD_FILE: MSMg01no215_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCCTATAGGTACGAGATAAGCGGAATTCTTCTATCTTTG
ACGAAAAAAAATGGAATTTTGATGGTGATTGCTTTGAAATAGTAAATTGC
TTTATGCACCTGAACATTTTTACCATGTTAAACCTGCTGATCCATGATCA
TGGGCAATCTTTCCATATTCTGAGTTCATCTTCAATTTCTTTCTTCAAAT
ACTTGAAATTCTTGTCACACAGATTTTTCATTTGCTTGGTTAGTTTCACA
CCAAGATATTTCATATTATTTGTGACTATTTTAAAGTATGTTGTTTCCCT
AATTTTTTTCTCACCCAGTTTAGCCTTTGAGTACAAGAAAGCTACTGATT
TTCTTGACTCTACCTTATTACCCATCCTTATTTCTAATGTTGTTTATCTA
TTGTACCCCACCCTCATGAAAAATTTTTTGTGTCACTCATATATACTATC
ATATCATCTGCTTATAGCGATATCTTAGACTCTTCCCTTCCATTTTGTAT
TACTTTAATCTCCATTTTATTGTCTAATTTCTCCTGATCCAAAACCTTCT
AGCACCCATAAAGAATTCGATTAACCTTTGTATATTGTGTATTGTCAATA
CTATGGAATTATTTTTGTTATGCCTAACTGCGCCTTTTTCCATTTATTTT
TTATTTTTATAACTAAGGTTTTACTTCCTTCCCTACAACTATTGTATGAT
ATTATTCTATGTATAACTATTGTTATTTCAATCAATGTTGTAATCTTCCT
CCATTAATATATC
TTTTTCCTTCTCCTTTTCTTTTTTTCTTTTTTTTCTTTTTTTTTCTTTAC
AATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCCCAAATATCTTAACCTACTGATTTCAGGACCA
ATTTCTCTTATTTTCAAGGTTTTGCCCAATGTTTCAATGACCCTCGTTGG
GAAATTTATTCCCAATTACTGATAATGTTGATTACATATAAGTTTGATAA
TAAATGCTGAAACAAATAGGAGTGTGTGCCAGTAAAAATATTGGCAACTT
TGGTTTCTATTGGGTATATTTGTATTTGCTTGTGTCTGTGAGGGTATGCA
AGTGTCAAGCACATGTGCAAAGTTCATGGACAACTTTAACTGTCAGTCTT
CACCGTCACATTGTTTTATTTAGGGTTTCTCATCTGTGGCTCATAAAATC
AGGTTAGATGGACTGTTATGCCCCCCACGTCTCCAGTTACCTCTTCTTAT
CTCTCTATGTGGCTACTGACGCTAACAAAAATATTGTACCTCTGTATCTG
GCTTTAAATGGATATTTTTAATGTATTAGTAACTTCCCCCAAGTTAGTTT
ATTAAATATTTAACCATTTTTATATTTCCTTGAAAATAGTTATAAACTTT
TTACACCTTGTAATTTCTTATTTTTTCTGGGAATTCTCCTAACGGCTTTA
TTTATGCCCTTTATATCAATCATTTTTTTATAAAGTTTGGTTATTTGAAC
CCTTTTTGTACGAAACTATAATTTAATTTTATAAGGTTTCATTATTCATT
TCTTTGTTTTATAATCTTAATTGTTTCTTTTTTTTTATCTCTATGTTATT
TATCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_n07.g1 MSMg01no215_n07.g1 CHROMAT_FILE:
MSMg01no215_n07.g1 PHD_FILE: MSMg01no215_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:36 2005
         (165 letters)



>mm_chr1_101018318_101018882
          Length = 565

 Score =  246 bits (127), Expect = 6e-70
 Identities = 148/155 (95%), Gaps = 2/155 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  accctcgttgggaaatttattcccaattactgataatgttgattacatataagtttgata 71
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 365 accctcgttgggaaatttattcccaactactgataatgttgattacatataagtttgata 306

                                                                       
Query: 72  ataaatgctgaaacaaataggagtgtgtgccagtaaaaatattggcaactttggtttcta 131
           |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct: 305 ataaatgctgaaacaaataggagtatgtgccactaaaaatattggcaactttggtttc-a 247

                                              
Query: 132 -ttgggtatatttgtatttgcttgtgtctgtgagg 165
            |||||||||||| ||||||||||||||| |||||
Sbjct: 246 gttgggtatatttatatttgcttgtgtctatgagg 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)