TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAAAATATGTATTATTCTGAAGGGTAATCTAAGCAGAACAACT
ATTTCCCATATAAGTATGTGCATTAATCTTTCCATCAATTATCAGTCTTG
TGTTAGGCCAGACAGGTGTGCGCTACAGCCACTGAGTTGGCTGGGTCCAG
ATTCTTTTCTAATATTTGATGACAAGTGGATAATCTGACAGAAAATAAGA
ATTACACTATCATCATACAATTTATTTTTGTATAGTTTGATTCCATATTA
ATGAATAAAAGTGTAAATAACATATAAACACCACTTTGATTCATTTATGA
GTAGAATTCAAGGAATAATGGAAACTTATGGTGCCTCCGTATCAGCATTA
GGGTCCTCTGCAGTCCCCTTTTTGCACATAAACAGCAGAATAGATTCTGA
CCAAGTTTGTTGTTGTATGCAATAACACTGACTCCTGTGTCATAAACATA
CTGAACCGCTGGCTTCTCTATCCAGACCACAGTATACCTGAGATCAGCTT
GTCTGGGTTTCTGTGTGGCTTCCTCTCTCCCCTTTCTTCATTTCCCTCGC
AGCCTCAGTCAGTTCTACATCACTAATGCGGAGCAAGGTCTTGAGACACT
GAGTCTAGTATGATTTATTCCATAGGCAATCCTCGTGACCCAAAGTAGGG
AAATTCTACTACAGTGTGTCACTGTTGTTAA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTGCCTCAAACTCAATAAAA
GAGTTACGCTTGAGAGCAATTATCTGACCTGATCATCCATGCTGAGATTT
CTGTGTGCCCTGCTTACATACACTGGCCTCTGTGAAGAGAAATGAAAGCA
ACTTACTCATTTTCATTCTTCCACGTAATCTGTCTTCCATCCCCAGTACC
TATTGAACAGTTCCAAGAACAGACTGCAAAGATAAAATCCCAATTTCTCA
CAGGCAATTTTATTATTCAGATAGTTGCAATAGCTTTTAGTTTGATCATA
GAGTCACTCAGAATTTCATAATGACAGGGTCTACAATCTGAACTTCGTGG
AGCAGTGCTGGGCGAGGTTGCTTAACAATGCTACAAATCAAGATGCTGAC
TTGTAAAATGTAGGTAGCCTGAAATGCCCTCATACTTCAATGGGCTTACA
TTGGAACATAAATTCCAATATACCTATCCAATATCTGAAATTTAATAAGA
TATTTTCATTTACTAAATAAATTTTAACTCAACAATAAAAACTATTTACA
TCTTATAAACACGTTATTTTTAATAAGACTTCAAATATCATACAGAAGTC
AATAAAAGCAATTTTCCATAAACTATAGAATTTATACGGTATCTTCAAGG
ATAATTCCAAAATCGAGCCAGGGTAATGGAAGCAGAAT

Query= MSMg01no216_m04.b1 MSMg01no216_m04.b1 CHROMAT_FILE:
MSMg01no216_m04.b1 PHD_FILE: MSMg01no216_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:53 2005
         (304 letters)



>mm_chr1_68716527_68717230
          Length = 704

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgtatcagcattagggtcctctgcagtcccctttttgcacataaacagcagaatagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccgtatcagcattagggtcctctgcagtcccctttttgcacataaacagcagaatagat 445

                                                                       
Query: 61  tctgaccaagtttgttgttgtatgcaataacactgactcctgtgtcataaacatactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgaccaagtttgttgttgtatgcaataacactgactcctgtgtcataaacatactgaa 385

                                                                       
Query: 121 ccgctggcttctctatccagaccacagtatacctgagatcagcttgtctgggtttctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccgctggcttctctatccagaccacagtatacctgagatcagcttgtctgggtttctgtg 325

                                                                       
Query: 181 tggcttcctctctcccctttcttcatttccctcgcagcctcagtcagttctacatcacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggcttcctctctcccctttcttcatttccctcgcagcctcagtcagttctacatcacta 265

                                                                       
Query: 241 atgcggagcaaggtcttgagacactgagtctagtatgatttattccataggcaatcctcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgcggagcaaggtcttgagacactgagtctagtatgatttattccataggcaatcctcg 205

               
Query: 301 tgac 304
           ||||
Sbjct: 204 tgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no216_m04.g1 MSMg01no216_m04.g1 CHROMAT_FILE:
MSMg01no216_m04.g1 PHD_FILE: MSMg01no216_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:53 2005
         (580 letters)



>mm_chr1_68563461_68564440
          Length = 980

 Score = 1098 bits (568), Expect = 0.0
 Identities = 577/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattgcctcaaactcaataaaagagttacgcttgagagcaattatctgacctgatcat 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||
Sbjct: 201 caaattgcctcaaactcaataaaagagttacgcttgagagcaattagctgatatgatcat 260

                                                                       
Query: 61  ccatgctgagatttctgtgtgccctgcttacatacactggcctctgtgaagagaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgctgagatttctgtgtgccctgcttacatacactggcctctgtgaagagaaatgaa 320

                                                                       
Query: 121 agcaacttactcattttcattcttccacgtaatctgtcttccatccccagtacctattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaacttactcattttcattcttccacgtaatctgtcttccatccccagtacctattga 380

                                                                       
Query: 181 acagttccaagaacagactgcaaagataaaatcccaatttctcacaggcaattttattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagttccaagaacagactgcaaagataaaatcccaatttctcacaggcaattttattat 440

                                                                       
Query: 241 tcagatagttgcaatagcttttagtttgatcatagagtcactcagaatttcataatgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagatagttgcaatagcttttagtttgatcatagagtcactcagaatttcataatgaca 500

                                                                       
Query: 301 gggtctacaatctgaacttcgtggagcagtgctgggcgaggttgcttaacaatgctacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtctacaatctgaacttcgtggagcagtgctgggcgaggttgcttaacaatgctacaa 560

                                                                       
Query: 361 atcaagatgctgacttgtaaaatgtaggtagcctgaaatgccctcatacttcaatgggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaagatgctgacttgtaaaatgtaggtagcctgaaatgccctcatacttcaatgggct 620

                                                                       
Query: 421 tacattggaacataaattccaatatacctatccaatatctgaaatttaataagatatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacattggaacataaattccaatatacctatccaatatctgaaatttaataagatatttt 680

                                                                       
Query: 481 catttactaaataaattttaactcaacaataaaaactatttacatcttataaacacgtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catttactaaataaattttaactcaacaataaaaactatttacatcttataaacacgtta 740

                                                   
Query: 541 tttttaataagacttcaaatatcatacagaagtcaataaa 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttaataagacttcaaatatcatacagaagtcaataaa 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)