BAC Information

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BAC

Clone NameMSMg01-217A03
Chromosome1 (Build37)
Map Location 27,476,933 - 27,477,342
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217A03.T7 (MSMg01no217_a03.b1)MSMg01-217A03.TJ (MSMg01no217_a03.g1)
ACCAG396684AG396685
length1,2411,246
length of high quality
(start - end)
427 (28 - 454)367 (71 - 437)
definitionCHROMAT_FILE: MSMg01no217_a03.b1 PHD_FILE: MSMg01no217_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:16 2005CHROMAT_FILE: MSMg01no217_a03.g1 PHD_FILE: MSMg01no217_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCAA
CATCCCTTCATGTTAAAAGTCTTGGGAAGATCAGGAATTCAAAGCCCATA
CCTACAAATAATAATAGCAATATAGAGCAAACCAGTAGCCAACATCAAAA
AGTCTTTAAAGATATTTCCTGGGGCTCTCATTCTTTCCCTGTGTCATCTG
GATCACCTTAGATAAATTTATCGGCCCTCTTCTGGCTTCTTTGAGGTATA
GTATCAGACTCTGGCAGTAGACCCAGAGTCTCTCCTTAACTTCAGGAGTG
TTAAAATCCCAGTCAGATCTAGTCAAAGGAAAGGCTGCATTGATATCAGT
CTGTTTCAGTATATATATAGTTTTAACTTATTGTGACATTTTTATTTTTA
TTTATATAGTTTTTTAATTAGATATTTTCTTCATTTACAATTCAAATACT
ATTTTTTTTCCCCCCCCCCCCCTCNCCTAGNCCTGCTCAAAAAAAAAGTC
TCTCCTGCTTCCTGGCCCTGGCATTCCCCTGTACTGGAGCATATAATCTT
TGCAAGACCAAGGGCCTTGTAAATATGGATGTCTTTTCCAAGTTGTTGAA
AGATATCAAACAAACAAACATAAATAAATAAATGCATATTTAATATACAT
ATTATATGCTATGTATGCATTTGTAATGTATTTTAGCTTAACACATACCT
GATTAAAAAGGAAAGTGGTTGTTTTCAGTTTCCGGTTGTTACAGATAAAC
CTCCTATGAACATAATTGAGCAGCATGTTTGCAAAATATAAGGTATATCT
GTCAGCATTGGCACTTACAATGGAACAATGGACACCGGAATTATCATCCC
ACGATATGCAAGTCTATCATTGGGATGTAAAGCAGGTCATCAAACCTACT
AAAAGGAATTGACCATTGCCAATGATCCCATATGCAGTGAAAACACAATA
TAGTAAATTTTTAATGTAAAAATAATGATTAAGAAATGAAGGATGGAAAA
ACTGTTCTGGTACTGTCCACTTGGAAAGCCAATAAACAATAAAAATTGGT
TGCTAAAGGGTTTGTACACCTGCCAAAGTAATAAAAACCTTGGGAAAAAA
GTGAGAAAGGAATGGGTTCTGAAAAAAAAAAAAGGCCGGGGGTTAAATTT
TATTTCTCCAAACATTTCAAGAAAAATGGGCACTTTAAAACCTAAAAAAC
CTTGTTTATATAAGGAAACCTTGGAATGTAGGTCTCATGTT
NNTTTTCACGGTTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGACCTTTCTCCACTTACTTTTTTTTTTA
ATTTATTTTTATTAGGTATTTTCTTCATTTACATTTCAAATGCTTTCCCA
AATGTCCCCCATACCCTCCCCCCTACTCCCTTACCCACCCACTCCCACTT
CTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCA
AGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTCTGATACATAT
GCAGCTAGAGACAGGAGCTCTGTGGGTACTGTTTAGTTCACATTATTGTT
CCACCTATAGGGTTGCAGACCCCTTTAGGTCCATGTATAATTTCTCTAGT
TCTTTCTCTGAGGGCCCTGTGTTCCATCCAATAGCTGAATGTGAANATCT
GTTTTTTTTTCCCCCCCCCCCCANNNANTTGAAATTGAATAAAGAAAAAA
GAAATAGGAATGGAATGATTTGNAGTCTTCTACATGATAACCACCAGTTG
AGCCAGCACCATTTGTTGAATATGCTGTCTTTTTCTCACTGGGTGGTGTT
AGCTACTTTGTCAAAGATCAATAGATGATAGGTGTGTGGGTTCATTTCAG
GGTCTTCAATTCTATTCCATTGATCTACCTGTCTGTCACTGTACCAGTAG
TATGCAATTTTATCACAATTGCTCTGTAATACAGCTTGAGATCAGGAATG
GTGATTCCACCAAAGTTTCTTTTATTGCTGAGAATAGTTTCTTGTATTCT
AGTCCTTTGGTATTCCAGATGAATTTGCCAAATTGGCCTTTCTAACTCTA
TGAAAAATTGATTTGGAATTTTGATGGGGATTGAATTGAATCTGAAAATT
GCTTTCATCAAGATAACCTTTTTTACAATGTTAATCCTGCCCAACCCTTG
ATCATGGAAAATCCTTTCATATTCTGAAATTTCTTTGAATTCTTTCTTCC
AAAACTTGAATTTTCTTTTTATAAGAATCTTTCTCCCCCTTTATTAAAAT
TCTCACTTAAGGTATTTTTAATTAATTTGTAACACATGGCAAAAGGCATT
GTTTTCCCTAAAATTTTTTTCCCACCCCGTTTTAATTCTTTTTTTAAATA
AAAAAGCCCCCCGAATATTTCTTTAGAATAAATTTTTATTTCCCACCTAC
TCTTCTGTAATAGTTGTTATATCCATCTTAAATAACTTTTCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_a03.b1 MSMg01no217_a03.b1 CHROMAT_FILE:
MSMg01no217_a03.b1 PHD_FILE: MSMg01no217_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:16 2005
         (427 letters)



>mm_chr1_27476676_27477502
          Length = 827

 Score =  733 bits (379), Expect = 0.0
 Identities = 403/411 (98%), Gaps = 2/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcaacatcccttcatgttaaaagtcttgggaagatcaggaattcaaagcccatacc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaattcaacatcccttcatgttaaaagtcttgggaagatcaggaattcaaagcccatacc 608

                                                                       
Query: 76  tacaaataataatagcaatatagagcaaaccagtagccaacatcaaaaagtctttaaaga 135
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tataaataataaaagcaatatagagcaaaccagtagccaacatcaaaaagtctttaaaga 548

                                                                       
Query: 136 tatttcctggggctctcattctttccctgtgtcatctggatcaccttagataaatttatc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatttcctggggctctcattctttccctgtgtcatctggatcaccttagataaatttatc 488

                                                                       
Query: 196 ggccctcttctggcttctttgaggtatagtatcagactctggcagtagacccagagtctc 255
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggccttcttctggcttctttgaggtatagtatcagactctggcagtagacccagagtctc 428

                                                                       
Query: 256 tccttaacttcaggagtgttaaaatcccagtcagatctagtcaaaggaaaggctgcattg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tccttaacttcaggagtgttaaaatcccagtcagatctagtcaaaggaaaggctgcattg 368

                                                                       
Query: 316 atatcagtctgtttcagtatatatatagttttaacttattgtgacat-ttttatttttat 374
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 367 atatcagtctgtttcagtatatatatagttttaacttattgtgacatcttttatttttat 308

                                                              
Query: 375 ttatatagttttttaattagatattttcttcatttacaattcaaatactat 425
           ||| ||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 307 ttaaatagttttt-aattacatattttcttcatttacaattcaaatgctat 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)