BAC Information

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BAC

Clone NameMSMg01-217C02
Chromosome1 (Build37)
Map Location 23,833,537 - 23,833,938
singlet/doubletsinglet
Overlap geneB3gat2
Upstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneSmap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217C02.T7 (MSMg01no217_c02.b1)MSMg01-217C02.TJ (MSMg01no217_c02.g1)
ACCAG396763AG396764
length1,2661,385
length of high quality
(start - end)
409 (42 - 450)---
definitionCHROMAT_FILE: MSMg01no217_c02.b1 PHD_FILE: MSMg01no217_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:28 2005CHROMAT_FILE: MSMg01no217_c02.g1 PHD_FILE: MSMg01no217_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTGTCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCCTCTTTTTATTTTTTTTTTCTTTCTACTGAGTCACAGGAAGAAATG
TTGATCACTCTGTCACCCTCATTTCCCCGAGAACATCTGCAGATACAACT
CAGATCTGTTAAAGAGGTATAGCAATTATTCATGTAAATAATTAGAATTA
AGATGTTCTCTCCGGTTAAACCAAGAGCTGGCACGGATGCCAGCTTTTCT
TTGGAACATGGATTGGCTGCTGTGGCTACCATGCTTCTCTCTGCACTGGC
TTATGAAGTTAAATTTAGGCAGTGATCTCTTGGCTCCCAGACCACCCAGA
CACCCTGGTCCCTCATTCCAAGCACAGTAGCCACCACCAACTACCAGGGT
CTTTCATTGCTGCCCTTTGTTACTGGATGGCCCGGTCATCGAGAGTGGTA
TGTTTTTTTTCCCCCCCCCCCGGAAGGATGTCTCCTTGCCAAAAAAAATG
GGGCGGCCAATTTCTAGTTCCTTGTACAAGGCTCATCGTGGATGCAGTAA
TGGCTTTCTCTGGGTGATTTTTCTTGATCTTAGCCTCTGGAATCCTACAT
TTATTTATGTGTCCACAAGGTGGCGCACATGTCACTGTTCTCCTGACCTC
AGCTAGGAAGGGCCCCAGTCTCCCTCCAGGTGAAGCTTCTGTTCCTGGAA
GTAGCAGTTGAAGTGTTTACTGAATTCATTAATTTTAACTTTTCTCCCTT
CTCCGCTCTAAGGAGTTTATCACAATGAAGAGTTAATGCCCTGTTATTGG
TTCTGAGACAACACTGCCACTGTTTCCTTACAAGGAAATTTAATCTGCAA
AGATGCTTGACTCGACTGCATAACGCACCGAACATAATCGGTTCCACGGG
TCCTCATTGTGCTACCCATCAAATCCCCATATGCTCCGCTCTCATTGTTT
AAGTAAGGTGCCCGCTGCTTGTGTGCAAATTGTGTTTTTGTTGCCTTTCT
TGTCTACTCTCTTTTCTTTTTTTTATTTTCTCTTCATACTTCTTCTATCT
ATACTTTTCTCTTTTTTACTACTATTCTCCTTTTCTCTTCTTCTTTTTTA
CTTTATCTTCTTTACTCATCCTTTTTCTTTCTACCTTCTTTCCACCTTCC
CTTTTCTCTTACTTATTCTCTATATTATATTTTTTCTCTTCTATTACTTT
TTATTCTTTCTCTCTCTCTCTTATTTCTATTATTCTATCTCTTCACTTTA
TTCTTCTACTTNCTTT
TATCATGTTCGTATACTCCGCCTTTGCTGCTTTNTGCTCCCGACACTCGT
TATNCACGCACGCCTGTCTCATCATATACTNATTTTTGCTTCGTCCTAGT
TCGTAGTATACGTACTGCTTCCTCTCTTACACTATTAACTCACATCTCTA
CCTTCTCGCGCTCATATTACCACANTGTACTAACTGTCTCTGTCGATGTA
TAGCAGCGTCATCACTGCGCTGCGTCGCCGCTTACGCCTNAGTTACGTAT
GATGGCGTATCTTAGCGGTGTTATATGGATCGCAGTGCAGTCTATGCGTC
ATGATAGGCGTCGCGAGATTACGACGCCGCTCAGGATACTCGTATATATT
AATACGTATATAGCATGCCGGTGTATTGCTCACGTTATCAGCGATGTCGT
ATCTCTATACGCGAATAGCCGCATCGTGTGTTCTAGCGGACGCGAGGGAA
GAAGACAATTGAGTTAGTGCATAATATGCNATGAGTGGCTAGCAGTGAGG
CATGATGAGCGGAAAAGATACACACAGTCGCACTCAGCGCGCGCGCAGGA
CGACTGAGGTACACTTCATCGAATATAACGCCACGCGTGTTTATATACGA
ANCGAGTATTAACGATGTATTGAGAAATTAGCGATAGATCGCGAATATGA
TGCGACGGAGTCTATCATAGCCGAGTGCGATTCGCGACTTGCACTTATAA
TAGAATCGTGTACACGATCAGTACGCCTGTTGCTCCTTCTTCTGTGTACT
AGAATGTGTATGATGTACATCCAGAATCGCGCGCCGGCTGAATATTGTCG
TACTGTCTGAGCATCGATATCGATTACATACGCTTATTCATATCGATATC
TCTCGTGTATGCGCAGACAATGATCTGGAGATTTAAGTTGCGTAGTAGTG
TCTTGCAAGGGTAGCGTATGTATTCGGATTCGATGCGGTGTATCCGCTGC
GAACACCGGTACCACTTCGCTCCAATATTATCTGTGTATGATGCACCGTT
ACACATCGCGTGCGATACTATATATGACAGCGCGTGGTGATCGGATATGT
CATCGCCGCTGCGTCGTATATTATAGTTATCAGCGATTCGGCTACCGCGG
CGTAGCGCACAAACATAATATCTCAGTCCGTTATAGAGTCGTCTTCCGCT
ATATCGTATCTAACCGGTACAGCGCGAATTGATCGTTTATCGCGCTCTCT
ATTCGNCGCCGTGCACGAGAGATGCGTAGTGAGCTCACACGAACGTACTA
TATCGCGGTTCGCACCAACTTATGATGATATGTTCGCTCGCACCGCGACA
ATGCGTGAAATGTCAACTATGTGCGAAAGTGTGCACACTGGCGGACGCGC
CGCGGGCTCGAGGACTATTTGCGTATTACGCGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_c02.b1 MSMg01no217_c02.b1 CHROMAT_FILE:
MSMg01no217_c02.b1 PHD_FILE: MSMg01no217_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:28 2005
         (409 letters)



>mm_chr1_23833333_23834140
          Length = 808

 Score =  694 bits (359), Expect = 0.0
 Identities = 392/403 (97%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccctctttttattttttttttctttctactgagtcacaggaagaaatgttgat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccctcttttta-tttttttttctttctactgagtcacaggaagaaatgttgat 263

                                                                       
Query: 65  cactctgtcaccctcatttccccgagaacatctgcagatacaactcagatctgttaaaga 124
           |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactctgtcaccctcattttacagagaacatctgcagatacaactcagatctgttaaaga 323

                                                                       
Query: 125 ggtatagcaattattcatgtaaataattagaattaagatgttctctccggttaaaccaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 ggtatagcaattattcatgtaaataattagaattaagatgttctctctggttaaaccaag 383

                                                                       
Query: 185 agctggcacggatgccagcttttctttggaacatggattggctgctgtggctaccatgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agctggcacggatgccagcttttctttggaacatggattggctgctgtggctaccatgct 443

                                                                       
Query: 245 tctctctgcactggcttatgaagttaaatttaggcagtgatctcttggctcccagaccac 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 tctctctgcactggcttatgaagttaaatttaggcaatgatctcttggctcccagaccac 503

                                                                       
Query: 305 ccagacaccctggtccctcattccaagcacagtagccaccaccaactaccagggtctttc 364
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||   |
Sbjct: 504 ccagacaccctggtccctcattctaagcacagtagacaccaccaactaccagggtcagcc 563

                                                      
Query: 365 attgctgccctttgttactggatggcccggtcatcgagagtgg 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attgctgccctttgttactggatggcccggtcatcgagagtgg 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space:   319600
Effective search space used:   319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)