Query= MSMg01no217_d20.b1 MSMg01no217_d20.b1 CHROMAT_FILE:
MSMg01no217_d20.b1 PHD_FILE: MSMg01no217_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:38 2005
(312 letters)
>mm_chr1_163664713_163665427
Length = 715
Score = 547 bits (283), Expect = e-160
Identities = 303/311 (97%), Gaps = 3/311 (0%)
Strand = Plus / Minus
Query: 5 gaattctgatgtggttttgtggttttacagtaagcgtcccggctcttgtggacacagtgc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctgatgtggttttgtggttttacagtaagcgtcccggctcttgtggacacagtgt 456
Query: 65 gctttcagtttctgaaagtgagtcagatcgactttcctcttaggagtaagagtgaccctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gctttcagtttctgaaagtgagtcagatcgactttcctcttaggagtaagagtgaccctt 396
Query: 125 gctcaaaagggcactatgactagaaagacgaagcagctgaggccaccggtgccggagtgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gctcaaaagggcactatgactagaaagacgaagcagctgaggccaccggtgccggagtgc 336
Query: 185 ttgcgttagagcagtcgctggtttctgggtcttatgggta---ttttttttttttttaag 241
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 ttgcgttagagcagtcgctggtttctgggtcttatgggtaattttttttttttttttaag 276
Query: 242 gtgaactgttgagatctttttgcccatcgcgagtgattctgttgatgcggtctagaaaag 301
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 275 gtgaactgttgagatctttttgcccatcgtgagtgacactgttgatgcggtctagaaaag 216
Query: 302 gactcggagtt 312
||||| |||||
Sbjct: 215 gactcagagtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 715
Length adjustment: 9
Effective length of query: 303
Effective length of database: 706
Effective search space: 213918
Effective search space used: 213918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no217_d20.g1 MSMg01no217_d20.g1 CHROMAT_FILE:
MSMg01no217_d20.g1 PHD_FILE: MSMg01no217_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:38 2005
(293 letters)
>mm_chr1_163562149_163562841
Length = 693
Score = 553 bits (286), Expect = e-162
Identities = 289/290 (99%)
Strand = Plus / Plus
Query: 1 tggtaaaggaacatttactcagcaggccttaagccatcttacatgggtagtgggtgtggc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtaaaggaacattgactcagcaggccttaagccatcttacatgggtagtgggtgtggc 260
Query: 61 aggcctatcaagggctgacttaagttcaatgtccaagggaacacattacagcccatcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcctatcaagggctgacttaagttcaatgtccaagggaacacattacagcccatcctt 320
Query: 121 ctaaggcccacagcagcctcttcttctacacgcccttttgactgctgaagctttgtttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaggcccacagcagcctcttcttctacacgcccttttgactgctgaagctttgtttcc 380
Query: 181 tgaaggaataaaaaggcaaaacagtacttggaaagattgccccatcttcccacctcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaggaataaaaaggcaaaacagtacttggaaagattgccccatcttcccacctcccct 440
Query: 241 ccctccaactagacagcgacggtgtgtagaaatgtgaacacccttacata 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctccaactagacagcgacggtgtgtagaaatgtgaacacccttacata 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
