XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGGTCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATTAGTTTAGTGTCNAAGGACAANGCCAAGTTNNTTGATTCATTTA
GATTTGANCTTACCCCCCCAAAAAAAAAAAAAAAACGGTTGGGGGGGTCT
ACCTGACAACAACCAGACGTGTCATTACCAATTGTTGATTATGCTGTCCC
TCTTTCTTTGTCCGTTTCCAGTTCCCCTGTCGAATTATATGTTACCCTCA
TCGTGCTTTTTTCGTTTCTTTTGCCGTTTCTGTCGCCCTCCCCTCTTCTT
TTTTCTCTTTTTTTCCCCTTCCCTTTTCCCTTTTTTTTTTCCCCCCCTTT
TTTTTCGCTTCCCCGTCTCCGTTCCTTCGCGGTTATTTCCGTCTTTTCTT
TTTTTCTTCCCGCCCGCCCCATCTTTTTTTTCTCTTT

NAAAGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGCCATAAATGACAGA
GAACATTCAACAAGCGAGAGAACTGGGTTCTAAAAGTCAAAAGCCACAAA
ATTTACATCATGTCAAGGTTGGTTCAAGTCTGTCCATACTTTAATAAATA
CTTGGGAAATAACTTTAACTAGCTCAAAAATCGAGTTGCCCCCATCTTGC
GCGTAATACATCCTTATGACTCTGAAGCACTTTGTTGATTTGATAAGAGA
GAAAACATGTTTAAATTACCTGTGATAATTTTCCTATTATATTTATATTA
TGACATATATCATCTCTATAATTACATGTTTATATAATAATTATGTCATC
ATTTACCATGAGAAGTCATAATAGTTTGTACTGATAAGTACATGAATAGA
AAAAAAATTCTGTTTCGTACTGAAGTGGGAAAATTGAAGTTCTTAAAAAC
CAGGTTTAACACATAAGTGGATGCTCACAGTCAGCTATTGGATGGTTCAC
AGGGCCCCCAATGGAGGAGCTAGAGAAAATACCCAAGGAGCTAAAGGGAT
CTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTTCCCCGGAG
CTCTTGACTATAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCA
CTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATAT

Query= MSMg01no217_p14.g1 MSMg01no217_p14.g1 CHROMAT_FILE:
MSMg01no217_p14.g1 PHD_FILE: MSMg01no217_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:51 2005
         (657 letters)



>mm_chr1_142250194_142251253
          Length = 1060

 Score = 1147 bits (593), Expect = 0.0
 Identities = 619/629 (98%), Gaps = 3/629 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagccataaatgacagagaacattcaacaagcgagagaactgggttctaaaagtcaaa 60
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 629 atgagccataaatgacagagaacattcaacaagtgagagaactgggttttaaaagtcaaa 570

                                                                       
Query: 61  agccacaaaatttacatcatgtcaaggttggttcaagtctgtccatactttaataaatac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 569 agccacaaaatttacatcatgtcaaggttggttcaagtctgtccgtactttaataaatac 510

                                                                       
Query: 121 ttgggaaataactttaactagctcaaaaatcgagttgcccccatcttgcgcgtaatacat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 509 ttgggaaataactttaactagctcaaaaatcgagttgcccccatcttgcgtgtaatacat 450

                                                                       
Query: 181 ccttatgactctgaagcactttgttgatttgataagagagaaaacatgttta---aatta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 449 ccttatgactctgaagcactttgttgatttgataagagagaaaacatgtttaaataatta 390

                                                                       
Query: 238 cctgtgataattttcctattatatttatattatgacatatatcatctctataattacatg 297
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cctgtgataatgttcctattatatttatattatgacatatatcatctctataattacatg 330

                                                                       
Query: 298 tttatataataattatgtcatcatttaccatgagaagtcataatagtttgtactgataag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttatataataattatgtcatcatttaccatgagaagtcataatagtttgtactgataag 270

                                                                       
Query: 358 tacatgaatagaaaaaaaattctgtttcgtactgaagtgggaaaattgaagttcttaaaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tacatgaatagaaaaaaaattctgtttcgtactgaagtgggaaaattgaagttcttaaaa 210

                                                                       
Query: 418 accaggtttaacacataagtggatgctcacagtcagctattggatggttcacagggcccc 477
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 209 accaggtttaacaaataagtggatgctcacagtcagctattggatggttcacaaggcccc 150

                                                                       
Query: 478 caatggaggagctagagaaaatacccaaggagctaaagggatctgcaaccctataggtgg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 caatggaggagctagagaaaatacccaaggagctaaagggatctgcaaccctataggtgg 90

                                                                       
Query: 538 aacaacattatgaactaaccagttccccggagctcttgactatagctgcatatgtatcaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  aacaacattatgaactaaccagttccccggagctcttgactatagctgcatatgtatcaa 30

                                        
Query: 598 aagatggcctagtcagccatcactggaaa 626
           |||||||||||||||||||||||||||||
Sbjct: 29  aagatggcctagtcagccatcactggaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1060
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1050
Effective search space:   679350
Effective search space used:   679350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)