BAC Information

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BAC

Clone NameMSMg01-218A06
Chromosome1 (Build37)
Map Location 6,039,578 - 6,039,899
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp6v1h, EG636659, Oprk1, Npbwr1
Downstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218A06.T7 (MSMg01no218_a06.b1)MSMg01-218A06.TJ (MSMg01no218_a06.g1)
ACCAG397340AG397341
length760715
length of high quality
(start - end)
324 (44 - 367)191 (138 - 328)
definitionCHROMAT_FILE: MSMg01no218_a06.b1 PHD_FILE: MSMg01no218_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:54 2005CHROMAT_FILE: MSMg01no218_a06.g1 PHD_FILE: MSMg01no218_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGTGCAAACAGAAGGCTATTCTGAGAAAAAAATTCCACAAATTCT
GTTCTCAAGTGTACACGTGTTTCCAACAAGGTAGATGCACAACAGAGTTT
TTGAATCAACAATGAAAGATATGAATGTTGTAAGACTGCCAAACATGAAG
ATTGGAAAATTATATCTAGAATGGAAGAATATGGAAAGTGCAGCAATTTT
TATTCCAGTTATATAAGACTTATACACAGAAAATAACAAAACCCTTTATA
TTTATTTTACCATCCCTCATCCACTTATCAAGGAATCATCAGAGAATGTG
CTATAAAATATATTTGATTATTTTTTACCCCCACACCCCGTGCACATTTT
TAAAGCTTGCAGTAATAGATGAATCAGAAAGACCAAGACAAAGTACTTAC
TTAACCTTTGGTCTGAGCAAATATGCTAATGAAATCAGGAATAAATGTAT
TTGACTCACAGCTGTATAAAAGTGATCACGAGTTCTAGCTATGATGGGTT
TGTAAATCAGAATAGTGACATCACTGAATTTGAAAAGAGTCTAAAAATAA
GCAACAGCATCATCATGGATAATCCCCCTCGTGTTAACACACACTGAAGA
GCTTTCATGAAATATCTGAACAGAGATTCTCATAACATCAAGCCTTGCGC
CAGTTCTGATATTTCCAAGGAGATAAACATTTGGTGTTAGCAGTGTGGCA
AGCTTGTTGC
NNTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTAGAATTTTGTGCTA
AAACCAGCTGGCCATGGAATTTTTGTTTGTTTCCCCGTCTTTTGTGGGGG
GTGGGATACATTTGATGACTGCTTCTATTTCACTGGGAATCATAGGTCTT
TTTTAATTGTTTATCTGATTTTAATGTAACTTTGATAGACTGTATGTACT
GAAAAATATCCATTTCTTTTAGATTTTCCAATTTTGTATAGTACATTTTT
AACATGTTATCCTGATTCTCTAGATCTTCTGTGTTTGTTTTTATGTCCTC
CTCTTCATTTCATTAGTTAATTTTTTATAATTTTCCCAAGCAAACCCTGA
TTTTTTTCAAATAACCAATTTCTGAATTTCCCTACCCCCCTAGAAAAAGA
AAAAATTGTTTTCGGGTTGGGTGTGATTTTTTGACCCGTATTTTGGATTA
TTTTCCTGGTAGTCCTCCTTTCTAATGTAGTGAATTTATAATATGTTTGT
TTGATTGTTTGTTCCTTATAAAATTTTCTGGGTTATTGTTTGTTATAAAT
TCTGCAGGGGGCATTGGAATAACCGCTCTTTTCAAGTTTTTTTTTTTACT
TTTTTACCTTAAGTTCTACAACGTGTTTATATGAAAAATTTTTGTGGCCC
TTATATTTAAACGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_a06.b1 MSMg01no218_a06.b1 CHROMAT_FILE:
MSMg01no218_a06.b1 PHD_FILE: MSMg01no218_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:54 2005
         (324 letters)



>mm_chr1_6039374_6040099
          Length = 726

 Score =  603 bits (312), Expect = e-177
 Identities = 319/322 (99%), Gaps = 2/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagtgcaaacagaaggctattctgagaaaaaaattccacaaattctgttctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattccaagtgcaaacagaaggctattctgagaaaaaaattccacaaattctgttctca 467

                                                                       
Query: 65  agtgtacacgtgtttccaacaaggtagatgcacaac--agagtttttgaatcaacaatga 122
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 466 agtgtacacgtgtttccaacaaggtagatgcacaacagagagtttttgaatcaacaatga 407

                                                                       
Query: 123 aagatatgaatgttgtaagactgccaaacatgaagattggaaaattatatctagaatgga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagatatgaatgttgtaagactgccaaacatgaagattggaaaattatatctagaatgga 347

                                                                       
Query: 183 agaatatggaaagtgcagcaatttttattccagttatataagacttatacacagaaaata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agaatatggaaagtgcagcaatttttattccagttatataagacttatacacagaaaata 287

                                                                       
Query: 243 acaaaaccctttatatttattttaccatccctcatccacttatcaaggaatcatcagaga 302
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 286 acaaaaccctttatatttattttaccatccctcatccacttatcaaagaatcatcagaga 227

                                 
Query: 303 atgtgctataaaatatatttga 324
           ||||||||||||||||||||||
Sbjct: 226 atgtgctataaaatatatttga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 726
Length adjustment: 9
Effective length of query: 315
Effective length of database: 717
Effective search space:   225855
Effective search space used:   225855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)