BAC Information

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BAC

Clone NameMSMg01-218A12
Chromosome1 (Build37)
Map Location 96,169,376 - 96,169,663
singlet/doubletsinglet
Overlap genenone
Upstream geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
Downstream geneLOC666025, LOC100040685, LOC383603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218A12.T7 (MSMg01no218_a12.b1)MSMg01-218A12.TJ (MSMg01no218_a12.g1)
ACCAG397351AG397352
length755742
length of high quality
(start - end)
317 (42 - 358)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no218_a12.b1 PHD_FILE: MSMg01no218_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:55 2005CHROMAT_FILE: MSMg01no218_a12.g1 PHD_FILE: MSMg01no218_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCTTTCCACACTTTTATCATGAATGGGTGTTGGATCTTGTCAAAT
GCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTT
GTTTACATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCT
GCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATG
TGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGATTTTTGCATCGAT
ATTTATAAGAGAAATTGGTCTGATTTTCTCTATCTTTGTTGGATCTTTCT
GTGGTTTATTTTCATAATACCAGNGCCTTNCTAAATGAGTTGGGTAGAGT
ACCTTCTACTTCCATCTTGTGAAAAAAATAATGCAGAACTGGAATTAGAT
CTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGG
CTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTCCTTTAGGGGA
TATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTACCT
GGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTT
GAGTATAGCCTTTTGTATAAGGATCTGATGGCGTTTTGGATTTCTTCAGG
ATCTGATGTTAAGTCTCCCTTTTCAGTTTTGATTTTGTTAATTAGAATTT
TGTTN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACTGAACAAAGCCAAAAAGAATAACCT
AGAGAACTGTGATCCAGTTAATCCCAATAAAGTGCTAGCTCAAGATAACC
CTATGCCCACCTTGTACTCTTCTTTAAGAGCCTGAAAGAAGAAAGTCTCC
TGATGTTCTTAGCCATCCATGTCTATATCTAAAAACTTCTCCTTCATATC
TCAATTCTCATGCCACAATCAATTCTCTGAGGAGATGCAAAGCAGCTGAC
TCCAGTCAGCGTTAAACACGTACTTTCCATCAAGGTTGACCAAAGACCTA
ATTATTTCAGGCTTTGTTTTTTGCCAGGCTNACCCCAATTATTTGATTTG
ATTGCCTGAGGGAATGACAGACCACTTGCCATGAATATCTCACTACAAGC
AGCTTGGAACAATTCAGCGAACTGTTTTAATGGCTTAATTACTGTGGTTC
TTCAAATATTGGAATTAACCATAAATGAAAGTCATTTAAACTAACAAGCA
GGTAAGGTTGTTAGGACATCATACAGGTGTATGAGAAATATTTATCACGT
TGACTAAACATGGTCTCCACAGTGTAGACTCCACAATGAGCTTGGTTTAC
TGTGTCCTTACAGTCCTTTAATCAAAACCTAAAGGGTTAACATTGTGAAA
CCTTATTCACCAATAGGAATTACCAGCCCAATAATTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_a12.g1 MSMg01no218_a12.g1 CHROMAT_FILE:
MSMg01no218_a12.g1 PHD_FILE: MSMg01no218_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:56 2005
         (289 letters)



>mm_chr1_96169176_96169863
          Length = 688

 Score =  513 bits (265), Expect = e-150
 Identities = 283/291 (97%), Gaps = 5/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgaacaaagccaaaaagaataacctagagaactgtgatccagttaat--cccaataa 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||
Sbjct: 488 aactgaacaaagccaaaaagaataacctagagaactgtgatccagttaatag---aataa 432

                                                                       
Query: 59  agtgctagctcaagataaccctatgcccaccttgtactcttctttaagagcctgaaagaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agtgctagctcaagataaccctatgcccaccttgtactcttctttaagagcctgaaagaa 372

                                                                       
Query: 119 gaaagtctcctgatgttcttagccatccatgtctatatctaaaaacttctccttcatatc 178
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaagtctcctgatgttcttagctatccatgtctatatctaaaaacttctccttcatatc 312

                                                                       
Query: 179 tcaattctcatgccacaatcaattctctgaggagatgcaaagcagctgactccagtcagc 238
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcaattctcatgctacaatcaattctctgaggagatgcaaagcagctgactccagtcagc 252

                                                              
Query: 239 gttaaacacgtactttccatcaaggttgaccaaagacctaattatttcagg 289
           ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 251 gttaaacacgtactttccatcaaggttgaccaaagtcctaattatttcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)