Query= MSMg01no218_d02.b1 MSMg01no218_d02.b1 CHROMAT_FILE:
MSMg01no218_d02.b1 PHD_FILE: MSMg01no218_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:08 2005
(317 letters)
>mm_chr1_128219969_128220685
Length = 717
Score = 549 bits (284), Expect = e-161
Identities = 305/314 (97%), Gaps = 4/314 (1%)
Strand = Plus / Plus
Query: 4 ggaattccatgagtttgcattactttttttctttgtttctgtaggtgaattctgaggatg 63
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattctatgagtttg----actttttttctttgtttctgtaggtgaattctgaggatg 263
Query: 64 cagtgtgctgagtgttaactgcgactttagccttagaagcagcagtactggtttgggaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtgtgctgagtgttaactgcgactttagccttagaagcagcagtactggtttgggaaa 323
Query: 124 ccatcgtaacattatgcaatgttctcaataaaattagaatctttggagtttttctagaat 183
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 ccatcgtaacattatgcaatgttctcaataaaattagaatctttggggtttttctagaaa 383
Query: 184 cccaagtttaagtgaaaaaagaacttagaagcatagaatgttttcaaataaaataggtta 243
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 384 cccaagtttaagtgaaaaaagaacttagaagcatagaatgctttcaagtaaaataggtta 443
Query: 244 tttcttaatacctctgtaaggccattttcctaaatgttctttcttcctttgatgtgtgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcttaatacctctgtaaggccattttcctaaatgttctttcttcctttgatgtgtgtg 503
Query: 304 tatgtgtgtgtgtg 317
||||||||||||||
Sbjct: 504 tatgtgtgtgtgtg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_d02.g1 MSMg01no218_d02.g1 CHROMAT_FILE:
MSMg01no218_d02.g1 PHD_FILE: MSMg01no218_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:08 2005
(294 letters)
>mm_chr1_128365029_128365722
Length = 694
Score = 484 bits (250), Expect = e-141
Identities = 278/294 (94%), Gaps = 12/294 (4%)
Strand = Plus / Minus
Query: 1 aggattctagaattgagtggtatggtgttttggagaatatatttctaaacctgggacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aggattctagaattgagtggtatggtgttttggagaatatatttctaaacctgggacctg 548
Query: 61 cattttgtgtgctttcatgttgtgtgctcttggacatcctcttgcctcgctgttgtaaag 120
||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 547 cattttgtgtgctctcatgttgtgtgctcttggacatcctcttgccttgctg-------- 496
Query: 121 agactgtcagctggagtccatcagtctttgcaatctgaggcactcattgaaactatttat 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 -g---gtcagctggagtccatcagtctttgcaatctgaggcactcattgaaactatttat 440
Query: 181 tttattgtgatttaccttgtaccttgatagtgtgatccatatatggatgttaacttggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttattgtgatttaccttgtaccttgatagtgtgatccatatatggatgttaacttggag 380
Query: 241 gcaactgctgaataaaaattcttttcaggacttttaagagaggttattttgaat 294
||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcaactgctgattgaaaattcttttcaggacttttaagagaggttattttgaat 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
