BAC Information

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BAC

Clone NameMSMg01-218E23
Chromosome1 (Build37)
Map Location 171,822,627 - 171,822,938
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960
Downstream gene1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218E23.T7 (MSMg01no218_e23.b1)MSMg01-218E23.TJ (MSMg01no218_e23.g1)
ACCAG397524AG397525
length794748
length of high quality
(start - end)		316 (48 - 363)360 (389 - 748)
definitionCHROMAT_FILE: MSMg01no218_e23.b1 PHD_FILE: MSMg01no218_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:17 2005CHROMAT_FILE: MSMg01no218_e23.g1 PHD_FILE: MSMg01no218_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATAAAAACTCTAAAGATGGACTGTATCACAGCGCTAGGACAA
TGTTGTGCTCAGAGTGCATGGGGAATCTGTGCCACCCTCTCTCTATTTTG
TTTGCCTTCTGATCAGGTGGTTTAGAACTCCATCTTTCTGTGATTTTTAC
CCTGAAAACTGTTGAAACTGGAGAGTGGATATTATAGGAACATGCACATT
TATAGCCTGTTTAGAAGGAAATTTGGTTAACTGAGGGATCTTATACTTGC
AGTGGCACCTGGGATGAAGGTGTGTCTGAGCTCTTAACCTGTTGAGTTTG
AAACTAAGCAGTCAGTATTTTTTTGACCCCCCCCCGCAGGGCACCAAGTT
AGTGTGGGGGAGGTTGTGAGGTGTTTAAAAAAAAAAAAAAACTTGTGGGG
GTGGGGGCTCCTCCCTACCTTTTTTCCTTTTTCTCTTTTACTTCATCTCA
ATATAACACTACTCTTCTTCCCTTTTTTTCTTTATCTCTCCCTTAACCAT
TTATCCTTATATTTCTTTTTTTCTTCTATACACTTTCACTACCCCTATAC
TTCTCCCTCCTTTAACTTTACTTCTTATCCCCTCTTCTTTATAACCTTCT
TTCCACCTCAATCCTTATACTTTTGATTCTCACCCATCCCGTCTCCCCTC
TTATTTTATTCCATCATTATCCTTTTCAACCTTTCTCATATACTTCCTAA
TCAATTCTATTTTTTAACCCTACCGTTTTAAACTACCAAAATTN

TCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGATTAATGATTGGTGTGAAA
AGGTTTAGCCCACAGTAGGCTGTACAACCCAGGGCAGATGATTCTGGTAG
GTATATGAAAGGTAAATGAGCAAGAGACTGGAAGCAAGTCAGCAAACATA
TTCTTCCATGGTTTCTGCTTCAGTTTCTGCCACCAGATTTCTGCCTGACA
TCCTTCACTGTTGGATTGCAATGTAGAGGCTATAAGCTAAGTTGGTTTTG
GCCAGTATTTATCACAACAGCAGTAAGCATAGCGAATATGGAAATTAGTA
CAAGAAGTGGGATTTCTTNGTAATACCCCACCCCCCGCTTTTGAGTGAAC
TGTGGAAGTATTTAGAACTTCGGGATGGGAGACATAGAGTTCTTAGATCT
TTGAGCTGGGAAGACTAAAATGCTGAGAGCAATACAGATGAGGGAGGCTT
TGCTTGGGAAGTTTCAGATGGAAGTTTGAGGGTCACTCAAAGACTCTATC
AAGGTCACTAAGAATTAGGTTTAATAATAATTGAAGAGATAAAAGCTGGG
AATAATATATCTATATATCTATTCCTACACATATTTCCTCTATTCCAAAT
AGCTTACATTATTATAATATTTGAAATTTATATTTGTCATAATTAAAACA
CTGATACATTGTTAATCAACAACAGCCCACACTTTGCATTATACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_e23.b1 MSMg01no218_e23.b1 CHROMAT_FILE:
MSMg01no218_e23.b1 PHD_FILE: MSMg01no218_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:17 2005
         (316 letters)



>mm_chr1_171822423_171823138
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataaaaactctaaagatggactgtatcacagcgctaggacaatgttgtgctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattccataaaaactctaaagatggactgtatcacagcgctaggacaatgttgtgctca 457

                                                                       
Query: 65  gagtgcatggggaatctgtgccaccctctctctattttgtttgccttctgatcaggtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gagtgcatggggaatctgtgccaccctctctctattttgtttgccttctgatcaggtggt 397

                                                                       
Query: 125 ttagaactccatctttctgtgatttttaccctgaaaactgttgaaactggagagtggata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttagaactccatctttctgtgatttttaccctgaaaactgttgaaactggagagtggata 337

                                                                       
Query: 185 ttataggaacatgcacatttatagcctgtttagaaggaaatttggttaactgagggatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttataggaacatgcacatttatagcctgtttagaaggaaatttggttaactgagggatct 277

                                                                       
Query: 245 tatacttgcagtggcacctgggatgaaggtgtgtctgagctcttaacctgttgagtttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tatacttgcagtggcacctgggatgaaggtgtgtctgagctcttaacctgttgagtttga 217

                       
Query: 305 aactaagcagtc 316
           ||||||||||||
Sbjct: 216 aactaagcagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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