AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTGTTTCTTGAAATTTTGCCATATTCTTCAGGTGAGTGATGCGT
GCATCCATCTTAAATCTCTACTTTCGTGTATGGAGGGAAAGATGTCTATC
ACATGTAACACTTTAACAAAAAATTAAACTGATGTGAAATCTTATGGACT
AATTGTGTGTTCTATAATTCACATTTAAGTATTTATGTTTCAATGTGAAT
ATAGATTTGGAAACAGTTATTTAAATTCAAAAACAGTTGTTAGGTGAAGA
TACAATTAAGCAAGAAGAAGGAGTTTTTTTTTGAGAACACAACTATAAAG
TAGCTTTCTATTTTGGATGACTCTCTAAAACAAGANCCAGNAATTTGAAT
TTTGACCGTCAGTCCCCAACTCTATAAATGCGGATCTTATGTATGGGTTA
GGAGCACTAACTATGTGGCTAATAGTTATAGCATCCTAGAGAGTATTGCA
TGGAATATTTACTAGTTGGAATGAATGAATAAATTAATCAATGATAATGA
GAAAAATGGCACAGTGGCCTCAGTGCTTCCTCCATAAGTATGAGGACCCT
AGTTTGTCTTCCTAATTTCCATGAGTGACAGTGTTTACTTGACAGGCAGG
CAAGACAATTTAACTGATTAATTAACATCCAGCTTCACTAAAAGAACATG
CCTCAAAAATTAACGTAGAAAGCATCATAGTATGATACTCAAGGGTGAAC
TCTGGCTTCN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATGTGCAAATGAACTGTGTTTCTGGAG
AAAAAAAATTGGATATATAAGGATGAAGGTTGGGAAGAGCTTCCAGAGTT
TAAACTGTTCAGATTTTAAATCATAAGGTTGTGTTGGGATAAGCATTGCC
CTTTTATTTGTTATATTACACTCTGAGGTTTAAGTTGTTCGTGCTTAATA
ACAATCTGAAAAATATTAGATGATAAATTGAAGAAATAATTAATTCATAA
CTTTAAAAAAGTTATTATTGTATTTGGTCGTGATTATTTTATCATTATCA
CTAATTATCTTAGTCTTTTTCTTTGACCCCCCCCCAAATTAAACTTTATC
CTAGCAAGTAACACTCCTACCAGGAGTGAAGATGAAGGAATGGAGCATTT
TATCTGTAAAGCTAGATATCCCCGGTCCACATGTATTTCTTCTATCTCTG
AGAATGTTTCATTTTTCAGGGCTGAGGTAATAGCTCAGTTGATATTGTAC
TTGCCTTGCCCATAATCTATATTTCCAAAAGCTGGATATAGTACTGTGAA
CTTGTAATTCCAGATCTGGACAAGCAAAACCAAATAGATTCCTGAGGTAA
CTGTCCAATCAACTTAGACTAATTTAGTTTTAACCCAGGAAAAGACCTGC
TATAGTGGACTTTTCCCCTAATTGATTAAATAATAAAGACAAAAAGCCCA
ATATTGGTGAGAA

Query= MSMg01no218_i11.b1 MSMg01no218_i11.b1 CHROMAT_FILE:
MSMg01no218_i11.b1 PHD_FILE: MSMg01no218_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:34 2005
         (279 letters)



>mm_chr1_104132623_104133301
          Length = 679

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattgtttcttgaaattttgccatattcttcaggtgagtgatgcgtgcatccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattgtttcttgaaattttgccatattcttcaggtgagtgatgcgtgcatccat 264

                                                                       
Query: 65  cttaaatctctactttcgtgtatggagggaaagatgtctatcacatgtaacactttaaca 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttaaatctctactttagtgtatggagggaaagatgtctatcacatgtaacactttaaca 324

                                                                       
Query: 125 aaaaattaaactgatgtgaaatcttatggactaattgtgtgttctataattcacatttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaattaaactgatgtgaaatcttatggactaattgtgtgttctataattcacatttaa 384

                                                                       
Query: 185 gtatttatgtttcaatgtgaatatagatttggaaacagttatttaaattcaaaaacagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gtatttatgtttcaatgtgaatatagatttggaaacagttatttaaaatcaaaaacagtt 444

                                              
Query: 245 gttaggtgaagatacaattaagcaagaagaaggag 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 445 gttaggtgaagatacaattaagcaagaagaaggag 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no218_i11.g1 MSMg01no218_i11.g1 CHROMAT_FILE:
MSMg01no218_i11.g1 PHD_FILE: MSMg01no218_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:34 2005
         (292 letters)



>mm_chr1_104273139_104273830
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgtgcaaatgaactgtgtttctggagaaaaaaaattggatatataaggatgaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcatgtgcaaatgaactgtgtttctggagaaaaaaaattggatatataaggatgaaggtt 433

                                                                       
Query: 61  gggaagagcttccagagtttaaactgttcagattttaaatcataaggttgtgttgggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gggaagagcttccagagtttaaactgttcagattttaaatcataaggttgtgttgggata 373

                                                                       
Query: 121 agcattgcccttttatttgttatattacactctgaggtttaagttgttcgtgcttaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agcattgcccttttatttgttatattacactctgaggtttaagttgttcgtgcttaataa 313

                                                                       
Query: 181 caatctgaaaaatattagatgataaattgaagaaataattaattcataactttaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caatctgaaaaatattagatgataaattgaagaaataattaattcataactttaaaaaag 253

                                                               
Query: 241 ttattattgtatttggtcgtgattattttatcattatcactaattatcttag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttattattgtatttggtcgtgattattttatcattatcactaattatcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)