BAC Information

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BAC

Clone NameMSMg01-218I19
Chromosome1 (Build37)
Map Location 60,579,770 - 60,579,909
singlet/doubletsinglet
Overlap geneRaph1, LOC100043027
Upstream geneGm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2
Downstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218I19.T7 (MSMg01no218_i19.b1)MSMg01-218I19.TJ (MSMg01no218_i19.g1)
ACCAG397678AG397679
length755755
length of high quality
(start - end)
318 (46 - 363)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no218_i19.b1 PHD_FILE: MSMg01no218_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:36 2005CHROMAT_FILE: MSMg01no218_i19.g1 PHD_FILE: MSMg01no218_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATGTGCCTCTGCCTCCCAAGTGCTGGCATCAAAGGCGTGTATT
ACCTATGCTCAGCCAAGCCTGTTTTTTAATTTCAGCCTGATTTCTTTAAT
CCCAGGACTCAGAAGGTAGAGACAGAAGGGTGTCTGCATTTGAGGTCAAG
TAATCCTGATCTACATAAAGTTCCAAGCCAGCCAGGGCTACATAGTGAGA
GCCTTCTCTAAACAAAAACAAATTAACTTAACAGTCTCAAACTAAAAGAT
GGGAGAAAAATCCCACAATCCCAAGTTTTATTATGCTTTCAAAGATCAGT
CTAAATGCTTTTAATAANTTAGTCCTATTCGAGGCCCAATGAGATGGCTC
AGTGGTTAAGAGCACTCACCGCTCTTCAAAAGAAAAACTGGGTTTGATAC
GTAGCTGCCCACAATCATCTGTAACTCAGGAAGTCTGATGCTCTCTTCTG
ACCTAGCACCATCCACAGTATATTCCATATACAGACAGATATAGGTGCAA
GCTAAACACTCATGCACATAATATTTGAGTAAACAAGTTAAAAATAAAAA
TGCATTATCCCATATTGAAATATGCAAGCAGGACTTATAAAGATGGATGA
ACCTTATAGTTTTGATAGCTTTGTTAGGAAGGGTCCAGACAGGATCTCCT
TTCACGGCTAGCCTTAATCAAGCTCTGTGTTGTAGCCAAATATGGCCGTG
TAACN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTGTCGGGTTTGGTGCATCTT
TTAACCAGCCGAATTGAGTCCTTTACAAACTGCCGGCTGGGCTCCACAAA
CTGCATTACCTGATCCATGTTTGTTGGATGGCGGATTGAGAGTGTAGAGA
CACGTAGCTCAGGAGCCCAAGGCAACTCTTATTAAGGATAAAATTTAACT
GAGGCTGGTTTACAGGTTCAGAGTTTTAGTCCATTATCATCAAGGTGGAA
AGCATGGCAGCGTCCAGGCAAGCATCTAATGTAGGAGCTGAGAGTTCTAC
ACCTTGATCTGATTTTNCTAACTACAANACGGATTCCGGGCAGCTAGGAA
GAGGGTTTCTCAAACCCCCCCCCCACAAAGACAAATATATCCTCCGGTGA
GAGCACACCTACTCCAACAAGGCCATACCTCCTTAATAGTGCCACACCAA
GGGCCATGCATATTCAAGCCACTGCAGATATGTTGCCTCTATTTCTAGTT
TCTCTGGGGGCATTTATCCTGAAGGGGGGGTAATAAAGGTTGTAAAGGTT
ATCAAAATCCTTTTCTACAACTGTTGAGATATCAGATGACTTTTTTCCTT
GCTGCTGTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTCCTTC
TTCCTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTT
CCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_i19.g1 MSMg01no218_i19.g1 CHROMAT_FILE:
MSMg01no218_i19.g1 PHD_FILE: MSMg01no218_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:36 2005
         (287 letters)



>mm_chr1_60579570_60580256
          Length = 687

 Score =  224 bits (116), Expect = 4e-63
 Identities = 134/140 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctgtcgggtttggtgcatcttttaaccagccgaattgagtcctttacaaactgccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctgtcgggtttggtgcatcttttaaccagccgaattgagtcctttacaaactgccg 260

                                                                       
Query: 61  gctgggctccacaaactgcattacctgatccatgtttgttggatggcggattgagagtgt 120
            |||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||| ||
Sbjct: 261 actgggctctacaaactgcattacctgatccatgtttattgggtggtggattgagagcgt 320

                               
Query: 121 agagacacgtagctcaggag 140
           ||||||||||||||||||||
Sbjct: 321 agagacacgtagctcaggag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)