Query= MSMg01no218_k12.b1 MSMg01no218_k12.b1 CHROMAT_FILE:
MSMg01no218_k12.b1 PHD_FILE: MSMg01no218_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:44 2005
(318 letters)
>mm_chr1_141108446_141109163
Length = 718
Score = 542 bits (280), Expect = e-158
Identities = 304/312 (97%)
Strand = Plus / Minus
Query: 5 gaattcaaggccagcctgtgtgtcatggcgaaagtaaaaacttaaaaagtatgttgtttg 64
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 516 gaattcaaggccagcctgagtgtcatggcgaaagtaaaagcttaaaaagtatgttgtttg 457
Query: 65 ctataggtttccaaatataactgcgtatagatcttgaaaatatattgtcaaaagtgttgt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 456 ctataggtttccaaatataactgcgtatagatcttgaaaatatattgtcaaaagtgttct 397
Query: 125 gtgaaaagaattgttgaagctggagggtagaattaaattttttttgctacagacatttta 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 396 gtgaaaagaattgttgaagctggagggtagaattaaaatttttttgctacagacatttta 337
Query: 185 gtgttttcttctgaatgaagcagttaggcctttacatattttatacatccgatactgtct 244
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 336 gtgttttcttctgaatgaagcaattaggcctttacatattttatacatccaatactgtct 277
Query: 245 tccttgattctataaaggatgatgtagaataaccttattttatctttccatggcaacaac 304
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 276 tccttgattctataaaggatgatatagcataaccttattttatctttccatggcaacaac 217
Query: 305 attacttttgca 316
||||||||||||
Sbjct: 216 attacttttgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_k12.g1 MSMg01no218_k12.g1 CHROMAT_FILE:
MSMg01no218_k12.g1 PHD_FILE: MSMg01no218_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:44 2005
(289 letters)
>mm_chr1_141024148_141024836
Length = 689
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 acagggcaatagcatagcagtacaaaagacgtactttgagttcaagtaccactcaaaatg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acagggcaatagcatagcagtacaaaagacgtactttgagttcaagtagcactcaaaatg 260
Query: 61 gctgtcagtcctccttcatcagagtcctagagagtctgcaaaacaggcacattattgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtcagtcctccttcatcagagtcctagagagtctgcaaaacaggcacattattgaat 320
Query: 121 cttacctttaaacttgccaattcagacctgccttcaaacctcagagtcatgaagtctcat 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttacctttaaacttgccaatttagacctgccttcaaacctcagagtcatgaagtctcat 380
Query: 181 taacaaggtagagacagctactacgccttctctcccttttcctccattctgcagaatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaaggtagagacagctactacgccttctctcccttttcctccattctgcagaatata 440
Query: 241 tgaatagtcc-ctgtaagacatccctgctctggatgggatgtctta 285
||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatag-cctctgtaagacatccctgctctggatgggatgtctta 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
